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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Achondrogenesis De la chapelle dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 183 →
Achondrogenesis Diastrophic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 183 →
Achondrogenesis Diastrophic dysplasia, broad bone-platyspondylic variant
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 183 →
Achondrogenesis Ear disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 183 →
Acne inversa Pash syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NCSTN(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →
Activated pi3k-delta syndrome immunodeficiency 14b, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CD(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 181 →
Activated pi3k-delta syndrome immunodeficiency 14
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CD(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 181 →
Activated pi3k-delta syndrome Short syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3R1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Activated pi3k-delta syndrome PIK3R1-related immunodeficiency and SHORT syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3R1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Activated pi3k-delta syndrome PTEN hamartoma tumor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Adenosine kinase deficiency Sulfur amino acid metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
ADK(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Agat deficiency Cerebral creatine deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
alacrima, achalasia, and intellectual disability syndrome Glucocorticoid deficiency with achalasia
1 gene
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1 of 1 corroborated by 2+ sources
GMPPA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 295 →
alacrima, achalasia, and intellectual disability syndrome Intellectual disability with strabismus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GMPPA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 295 →
alacrima, achalasia, and intellectual disability syndrome Triple a syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GMPPA(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 295 →
Alpha thalassemia x-linked intellectual disability Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Alpha thalassemia x-linked intellectual disability Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Alpha-actinopathy Eichsfeld type congenital muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ACTA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Alpha-actinopathy Rigid spine muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ACTA1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Aminoglycoside-induced deafness Deafness, aminoglycoside-induced
1 gene
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1 of 1 corroborated by 2+ sources
TRMU(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Amr syndrome Perniola krajewska carnevale syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 362 →
Amyloid angiopathy Amyloid neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →
Amyloid neuropathy Partial epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →
Amyloid neuropathy Eye manifestations
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →
Amyloid neuropathy cerebral amyloid angiopathy, app-related
1 gene
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1 of 1 corroborated by 2+ sources
APP(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 116 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.