Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chromosome 22q11.2 microduplication syndrome Common arterial trunk with pulmonary dominance and interrupted aortic arch
1 gene
Show details
1 of 1 corroborated by 2+ sources
TBX1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 283 →
Chromosome 2q32-q33 deletion syndrome Glass syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SATB2(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 2q32-q33 deletion syndrome Satb2 associated syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SATB2(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 6q24-q25 deletion syndrome Stress urinary incontinence
1 gene
Show details
TAB2(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 188 →
Chromosome 8p23.1 monosomy Pancreatic hypoplasia-diabetes-congenital heart disease syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GATA4(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 60 →
Chromosome 8p23.1 monosomy Partial atrioventricular canal defect
1 gene
Show details
1 of 1 corroborated by 2+ sources
GATA4(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 60 →
Chromosome xq27.3-q28 duplication syndrome Xq27.3 q28 duplication syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
FMR1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chronic infantile diarrhea due to guanylate cyclase 2c overactivity Congenital sodium diarrhea
1 gene
Show details
1 of 1 corroborated by 2+ sources
GUCY2C(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 172 →
Chronic progressive external ophthalmoplegia Rod-cone dystrophy, sensorineural deafness, and fanconi-type renal dysfunction
1 gene
Show details
1 of 1 corroborated by 2+ sources
RRM2B(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chuvash erythrocytosis Pancreatic cyst
1 gene
Show details
1 of 1 corroborated by 2+ sources
VHL(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Ciliary dyskinesia with retinitis pigmentosa Cone dystrophy, x-linked
1 gene
Show details
1 of 1 corroborated by 2+ sources
RPGR(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Ciliary dyskinesia with retinitis pigmentosa Cone-rod dystrophy, x-linked
1 gene
Show details
1 of 1 corroborated by 2+ sources
RPGR(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 84 →
Ciliary dyskinesia with retinitis pigmentosa X-linked cone-rod dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
RPGR(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 84 →
Ck syndrome Perisylvian polymicrogyria
1 gene
Show details
1 of 1 corroborated by 2+ sources
NSDHL(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 381 →
Cleft face Culler-jones syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GLI2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 212 →
Cleft face Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GLI2(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 212 →
Cleft face familial meningioma
1 gene
Show details
1 of 1 corroborated by 2+ sources
SMARCE1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 212 →
Clouston syndrome Senter syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
GJB6(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 210 →
Coagulation factor deficiency syndrome Congenital factor xi deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
F11(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Coagulation factor deficiency syndrome Factor xi deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
F11(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Arhinia-choanal atresia-microphthalmia syndrome Chediak-higashi syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SMCHD1(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 313 →
arrhythmogenic cardiomyopathy with wooly hair and keratoderma Lethal acantholytic epidermolysis bullosa
1 gene
Show details
1 of 1 corroborated by 2+ sources
DSP(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 201 →
arrhythmogenic cardiomyopathy with wooly hair and keratoderma Ventricular arrhythmia
1 gene
Show details
1 of 1 corroborated by 2+ sources
DSP(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 201 →
Arthralgia Hyper-igd syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
MVK(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 316 →
Arthralgia Bone marrow neoplasms
1 gene
Show details
CSF3(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 316 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.