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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alpha-1 antitrypsin deficiency Beriberi
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 245 →
Alpha-1 antitrypsin deficiency Panniculitis
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 245 →
Alpha-1 antitrypsin deficiency Thiamine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 245 →
Alpha-2-plasmin inhibitor deficiency Congenital plasmin inhibitor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Alpha-2-plasmin inhibitor deficiency Congenital alpha-2-antiplasmin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Alpha-actinopathy Zebra body myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTA1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Alpha-n-acetylgalactosaminidase deficiency Schindler disease
1 gene
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1 of 1 corroborated by 2+ sources
NAGA(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
ALPL-related autosomal dominant hypophosphatasia Hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
ALPL-related autosomal dominant hypophosphatasia ALPL-related autosomal recessive hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
ALPL-related autosomal dominant hypophosphatasia Micromelia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
ALPL-related autosomal recessive hypophosphatasia Hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
ALPL-related autosomal recessive hypophosphatasia Micromelia
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
Alveolar capillary dysplasia Congenital alveolar capillary dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Amaurosis hypertrichosis jalili syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Amelia Chromosome 17q23.1-q23.2 duplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 24 →
Amelia Coxopodopatellar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 24 →
Amelia Ischiocoxopodopatellar syndrome with pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 24 →
Amish nemaline myopathy nemaline myopathy 5
1 gene
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1 of 1 corroborated by 2+ sources
TNNT1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Amyloid angiopathy Partial epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Amyloid angiopathy Eye manifestations
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Amyloid angiopathy cerebral amyloid angiopathy, app-related
1 gene
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1 of 1 corroborated by 2+ sources
APP(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
amyloidosis, hereditary systemic 6 Beta2-microglobulinic amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
amyloidosis, hereditary systemic 6 Hypergammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
B2M(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
amyloidosis, hereditary systemic 6 hypoproteinemia, hypercatabolic
1 gene
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B2M(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 11 Bilateral parasagittal parieto-occipital polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 103 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.