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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Abcd syndrome Waardenburg syndrome type 4A
1 gene
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1 of 1 corroborated by 2+ sources
EDNRB(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Abeta amyloidosis Amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
APP(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Abeta amyloidosis Partial epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Abeta amyloidosis Eye manifestations
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Abeta amyloidosis cerebral amyloid angiopathy, app-related
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Ablepharon macrostomia syndrome Barber-say syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Ablepharon macrostomia syndrome Congenital ectodermal dysplasia of face
1 gene
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TWIST2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Abri amyloidosis Familial danish dementia
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Abruzzo-erickson syndrome Cleft palate with ankyloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 282 →
Abruzzo-erickson syndrome Cleft palate x-linked
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 282 →
Abruzzo-erickson syndrome X-linked cleft palate and ankloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 282 →
Acces syndrome Chromosome 19q13.11 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Aceruloplasminemia Hemosiderosis
1 gene
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1 of 1 corroborated by 2+ sources
CP(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 231 →
Acheiropody Patterson stevenson fontaine syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMBR1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Achondroplasia Camptodactyly, tall stature, and hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Achondroplasia Catshl syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Achondroplasia Crouzon syndrome with acanthosis nigricans
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Achondroplasia Muenke syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Achondroplasia Thanatophoric dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Acid sphingomyelinase deficiency Visceral acid sphingomyelinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SMPD1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Acro-dermo-ungual-lacrimal-tooth syndrome Ankyloblepharon-ectodermal defects-cleft lip/palate
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Acro-dermo-ungual-lacrimal-tooth syndrome Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Acro-dermo-ungual-lacrimal-tooth syndrome Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Acro-dermo-ungual-lacrimal-tooth syndrome Sweat gland neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Acromegaloid facial appearance syndrome Intellectual disability and myopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCC9(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 234 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.