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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bilateral frontoparietal polymicrogyria Perisylvian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Bilateral generalized polymicrogyria Hemimegalencephaly
1 gene
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1 of 1 corroborated by 2+ sources
GRIN1(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Cortical dysplasia with other brain malformations
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Bilateral generalized polymicrogyria Laryngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
RTTN(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Bilateral generalized polymicrogyria Trigeminal neuralgia
1 gene
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1 of 1 corroborated by 2+ sources
GRIN1(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
microcephaly 2, primary, autosomal recessive, with or without cortical malformations Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Congenital hemidysplasia with ichthyosiform erythroderma and limb defects Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
LAMA5-related multisystemic syndrome Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
LAMA5(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
LAMA2-related muscular dystrophy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
amyotrophic lateral sclerosis type 11 Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Anomalous pulmonary venous Polymicrogyria
1 gene
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PSMC3(1)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Deafness with cataract, intellectual disability, and polyneuropathy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Congenital merosin-deficient muscular dystrophy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Complex partial epilepsy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Ck syndrome Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bilateral parasagittal parieto-occipital polymicrogyria Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Byzanthine arch palate Perisylvian polymicrogyria
1 gene
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NSDHL(1)
0.067 0.500 1.69e-3 2.53e-3 ✓ sig. Cluster 381 →
Hydrocephalus megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Perisylvian polymicrogyria Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPAP(6)
0.050 0.500 2.34e-3 3.24e-3 ✓ sig. —
megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(3)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(2)
0.021 1.000 3.05e-3 4.02e-3 ✓ sig. —
Polymicrogyria Skraban-deardorff syndrome
1 gene
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WDR62(1)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —

Showing 25 of 54 matching pairs, sorted by significance (ascending). Click a column header to sort.