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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Muscular dystrophy-dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b6
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a6
1 gene
Show details
1 of 1 corroborated by 2+ sources
LARGE1(2)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Cobblestone lissencephaly Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a10
1 gene
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RXYLT1(1)
0.250 1.000 1.94e-4 4.41e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with or without impaired intellectual development), type b5 Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(2)
0.167 1.000 3.23e-4 6.41e-4 ✓ sig. —
Kenny-caffey syndrome Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a11
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a11
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Myopathy caused by variation in POMT2
1 gene
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1 of 1 corroborated by 2+ sources
POMT2(2)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a4
1 gene
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FKTN(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Myopathy caused by variation in POMT1
1 gene
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1 of 1 corroborated by 2+ sources
POMT1(2)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b1
1 gene
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POMT1(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b2
1 gene
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POMT2(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(2)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b3
1 gene
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POMGNT1(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(2)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital without impaired intellectual development), type b4
1 gene
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FKTN(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(2)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a9
1 gene
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DAG1(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a1
1 gene
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POMT1(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a2
1 gene
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POMT2(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a12
1 gene
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POMK(1)
0.143 1.000 3.87e-4 7.33e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a6
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(2)
0.125 1.000 4.52e-4 8.26e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with or without impaired intellectual development), type b5
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(2)
0.125 1.000 4.52e-4 8.26e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b6
1 gene
Show details
1 of 1 corroborated by 2+ sources
LARGE1(2)
0.125 1.000 4.52e-4 8.26e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy Muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual development), type b3
1 gene
Show details
1 of 1 corroborated by 2+ sources
POMGNT1(2)
0.125 1.000 4.52e-4 8.26e-4 ✓ sig. —
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a1 Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
POMT1(2)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —

Showing 25 of 89 matching pairs, sorted by significance (ascending). Click a column header to sort.