SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48)

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Gene miRNA Gene ontology Other IDs Protein Pathways Related genes Diseases linked via similar genes

Gene

• Entrez ID: 154007
• Gene name: Small nuclear ribonucleoprotein U11/U12 subunit 48
• Gene symbol: SNRNP48
• Synonyms (NCBI Gene): C6orf151, dJ336K20B.1, dJ512B11.2
• Chromosome: 6
• Chromosome location: 6p24.3

miRNA Show/Hide all (314)

miRTarBase ID	miRNA	Experiments	Reference
MIRT030727	hsa-miR-21-5p	Microarray	18591254
MIRT044542	hsa-miR-320a	CLASH	23622248
MIRT626142	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT626141	hsa-miR-4676-5p	HITS-CLIP	23824327
MIRT626140	hsa-miR-575	HITS-CLIP	23824327
MIRT626139	hsa-miR-4494	HITS-CLIP	23824327
MIRT626138	hsa-miR-936	HITS-CLIP	23824327
MIRT626137	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT626136	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT626135	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT626134	hsa-miR-3130-3p	HITS-CLIP	23824327
MIRT626133	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT626132	hsa-miR-767-5p	HITS-CLIP	23824327
MIRT626131	hsa-miR-376a-2-5p	HITS-CLIP	23824327
MIRT626130	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT626129	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT626128	hsa-miR-7703	HITS-CLIP	23824327
MIRT529565	hsa-miR-6715a-3p	PAR-CLIP	22012620
MIRT529564	hsa-miR-1825	PAR-CLIP	22012620
MIRT529563	hsa-miR-199a-5p	PAR-CLIP	22012620
MIRT529562	hsa-miR-199b-5p	PAR-CLIP	22012620
MIRT529561	hsa-miR-371a-5p	PAR-CLIP	22012620
MIRT529560	hsa-miR-5681a	PAR-CLIP	22012620
MIRT529559	hsa-miR-6730-5p	PAR-CLIP	22012620
MIRT529558	hsa-miR-6715b-3p	PAR-CLIP	22012620
MIRT529557	hsa-miR-488-3p	PAR-CLIP	22012620
MIRT446517	hsa-miR-3149	PAR-CLIP	22100165
MIRT446517	hsa-miR-3149	PAR-CLIP	22100165
MIRT626142	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT626141	hsa-miR-4676-5p	HITS-CLIP	23824327
MIRT626140	hsa-miR-575	HITS-CLIP	23824327
MIRT626139	hsa-miR-4494	HITS-CLIP	23824327
MIRT626138	hsa-miR-936	HITS-CLIP	23824327
MIRT626137	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT626136	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT626135	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT626134	hsa-miR-3130-3p	HITS-CLIP	23824327
MIRT626133	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT626132	hsa-miR-767-5p	HITS-CLIP	23824327
MIRT626131	hsa-miR-376a-2-5p	HITS-CLIP	23824327
MIRT626130	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT626129	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT626128	hsa-miR-7703	HITS-CLIP	23824327
MIRT529565	hsa-miR-6715a-3p	PAR-CLIP	22012620
MIRT529564	hsa-miR-1825	PAR-CLIP	22012620
MIRT529563	hsa-miR-199a-5p	PAR-CLIP	22012620
MIRT529562	hsa-miR-199b-5p	PAR-CLIP	22012620
MIRT529561	hsa-miR-371a-5p	PAR-CLIP	22012620
MIRT529560	hsa-miR-5681a	PAR-CLIP	22012620
MIRT529559	hsa-miR-6730-5p	PAR-CLIP	22012620
MIRT529558	hsa-miR-6715b-3p	PAR-CLIP	22012620
MIRT529557	hsa-miR-488-3p	PAR-CLIP	22012620
MIRT446517	hsa-miR-3149	PAR-CLIP	22100165
MIRT446517	hsa-miR-3149	PAR-CLIP	22100165
MIRT1375994	hsa-miR-1207-3p	CLIP-seq
MIRT1375995	hsa-miR-1224-5p	CLIP-seq
MIRT1375996	hsa-miR-128	CLIP-seq
MIRT1375997	hsa-miR-1304	CLIP-seq
MIRT1375998	hsa-miR-140-5p	CLIP-seq
MIRT1375999	hsa-miR-142-3p	CLIP-seq
MIRT1376000	hsa-miR-150	CLIP-seq
MIRT1376001	hsa-miR-197	CLIP-seq
MIRT1376002	hsa-miR-199a-3p	CLIP-seq
MIRT1376003	hsa-miR-199b-3p	CLIP-seq
MIRT1376004	hsa-miR-2054	CLIP-seq
MIRT1376005	hsa-miR-24	CLIP-seq
MIRT1376006	hsa-miR-2467-5p	CLIP-seq
MIRT1376007	hsa-miR-2681	CLIP-seq
MIRT1376008	hsa-miR-28-5p	CLIP-seq
MIRT1376009	hsa-miR-30a	CLIP-seq
MIRT1376010	hsa-miR-30b	CLIP-seq
MIRT1376011	hsa-miR-30c	CLIP-seq
MIRT1376012	hsa-miR-30d	CLIP-seq
MIRT1376013	hsa-miR-30e	CLIP-seq
MIRT1376014	hsa-miR-3121-3p	CLIP-seq
MIRT1376015	hsa-miR-3129-5p	CLIP-seq
MIRT1376016	hsa-miR-3135	CLIP-seq
MIRT1376017	hsa-miR-3135b	CLIP-seq
MIRT1376018	hsa-miR-3139	CLIP-seq
MIRT1376019	hsa-miR-3140-3p	CLIP-seq
MIRT1376020	hsa-miR-3143	CLIP-seq
MIRT1376021	hsa-miR-3188	CLIP-seq
MIRT1376022	hsa-miR-338-5p	CLIP-seq
MIRT1376023	hsa-miR-342-3p	CLIP-seq
MIRT1376024	hsa-miR-342-5p	CLIP-seq
MIRT1376025	hsa-miR-3545-5p	CLIP-seq
MIRT1376026	hsa-miR-3665	CLIP-seq
MIRT1376027	hsa-miR-3672	CLIP-seq
MIRT1376028	hsa-miR-3674	CLIP-seq
MIRT1376029	hsa-miR-3691-3p	CLIP-seq
MIRT1376030	hsa-miR-374a	CLIP-seq
MIRT1376031	hsa-miR-374b	CLIP-seq
MIRT1376032	hsa-miR-377	CLIP-seq
MIRT1376033	hsa-miR-382	CLIP-seq
MIRT1376034	hsa-miR-3975	CLIP-seq
MIRT1376035	hsa-miR-4263	CLIP-seq
MIRT1376036	hsa-miR-4274	CLIP-seq
MIRT1376037	hsa-miR-4280	CLIP-seq
MIRT1376038	hsa-miR-4284	CLIP-seq
MIRT1376039	hsa-miR-4432	CLIP-seq
MIRT1376040	hsa-miR-4460	CLIP-seq
MIRT1376041	hsa-miR-4517	CLIP-seq
MIRT1376042	hsa-miR-4519	CLIP-seq
MIRT1376043	hsa-miR-451b	CLIP-seq
MIRT1376044	hsa-miR-4521	CLIP-seq
MIRT1376045	hsa-miR-4651	CLIP-seq
MIRT1376046	hsa-miR-4664-5p	CLIP-seq
MIRT1376047	hsa-miR-4694-5p	CLIP-seq
MIRT1376048	hsa-miR-4696	CLIP-seq
MIRT1376049	hsa-miR-4710	CLIP-seq
MIRT1376050	hsa-miR-4742-3p	CLIP-seq
MIRT1376051	hsa-miR-4751	CLIP-seq
MIRT1376052	hsa-miR-4786-5p	CLIP-seq
MIRT1376053	hsa-miR-485-5p	CLIP-seq
MIRT1376054	hsa-miR-502-5p	CLIP-seq
MIRT1376055	hsa-miR-518a-5p	CLIP-seq
MIRT1376056	hsa-miR-527	CLIP-seq
MIRT1376057	hsa-miR-543	CLIP-seq
MIRT1376058	hsa-miR-608	CLIP-seq
MIRT1376059	hsa-miR-665	CLIP-seq
MIRT1376060	hsa-miR-708	CLIP-seq
MIRT1376061	hsa-miR-769-5p	CLIP-seq
MIRT1376062	hsa-miR-889	CLIP-seq
MIRT1376016	hsa-miR-3135	CLIP-seq
MIRT2111779	hsa-miR-101	CLIP-seq
MIRT2111780	hsa-miR-1184	CLIP-seq
MIRT2111781	hsa-miR-1205	CLIP-seq
MIRT2111782	hsa-miR-1246	CLIP-seq
MIRT2111783	hsa-miR-1261	CLIP-seq
MIRT2111784	hsa-miR-1283	CLIP-seq
MIRT1375997	hsa-miR-1304	CLIP-seq
MIRT2111785	hsa-miR-139-5p	CLIP-seq
MIRT2111786	hsa-miR-144	CLIP-seq
MIRT2111787	hsa-miR-216a	CLIP-seq
MIRT2111788	hsa-miR-2467-3p	CLIP-seq
MIRT1376006	hsa-miR-2467-5p	CLIP-seq
MIRT2111789	hsa-miR-3125	CLIP-seq
MIRT1376016	hsa-miR-3135	CLIP-seq
MIRT2111790	hsa-miR-3158-5p	CLIP-seq
MIRT2111791	hsa-miR-3185	CLIP-seq
MIRT1376021	hsa-miR-3188	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2111793	hsa-miR-3678-3p	CLIP-seq
MIRT2111794	hsa-miR-371-5p	CLIP-seq
MIRT2111795	hsa-miR-371b-5p	CLIP-seq
MIRT2111796	hsa-miR-3916	CLIP-seq
MIRT2111797	hsa-miR-3973	CLIP-seq
MIRT1376034	hsa-miR-3975	CLIP-seq
MIRT2111798	hsa-miR-4266	CLIP-seq
MIRT2111799	hsa-miR-4452	CLIP-seq
MIRT2111800	hsa-miR-4666-5p	CLIP-seq
MIRT2111801	hsa-miR-4695-5p	CLIP-seq
MIRT2111802	hsa-miR-4699-3p	CLIP-seq
MIRT2111803	hsa-miR-4779	CLIP-seq
MIRT1376053	hsa-miR-485-5p	CLIP-seq
MIRT2111804	hsa-miR-548c-3p	CLIP-seq
MIRT2111805	hsa-miR-548k	CLIP-seq
MIRT2111806	hsa-miR-548v	CLIP-seq
MIRT2111807	hsa-miR-610	CLIP-seq
MIRT2111808	hsa-miR-630	CLIP-seq
MIRT2111809	hsa-miR-642b	CLIP-seq
MIRT2111810	hsa-miR-651	CLIP-seq
MIRT1376059	hsa-miR-665	CLIP-seq
MIRT2111780	hsa-miR-1184	CLIP-seq
MIRT2111781	hsa-miR-1205	CLIP-seq
MIRT1375996	hsa-miR-128	CLIP-seq
MIRT2335062	hsa-miR-1284	CLIP-seq
MIRT2335063	hsa-miR-1297	CLIP-seq
MIRT1375997	hsa-miR-1304	CLIP-seq
MIRT1376004	hsa-miR-2054	CLIP-seq
MIRT2111787	hsa-miR-216a	CLIP-seq
MIRT1376005	hsa-miR-24	CLIP-seq
MIRT2111788	hsa-miR-2467-3p	CLIP-seq
MIRT1376006	hsa-miR-2467-5p	CLIP-seq
MIRT2335064	hsa-miR-26a	CLIP-seq
MIRT2335065	hsa-miR-26b	CLIP-seq
MIRT2335066	hsa-miR-31	CLIP-seq
MIRT2111789	hsa-miR-3125	CLIP-seq
MIRT1376016	hsa-miR-3135	CLIP-seq
MIRT2335067	hsa-miR-3144-3p	CLIP-seq
MIRT2111790	hsa-miR-3158-5p	CLIP-seq
MIRT2111791	hsa-miR-3185	CLIP-seq
MIRT1376021	hsa-miR-3188	CLIP-seq
MIRT1376022	hsa-miR-338-5p	CLIP-seq
MIRT1376023	hsa-miR-342-3p	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2111793	hsa-miR-3678-3p	CLIP-seq
MIRT2335068	hsa-miR-3689a-3p	CLIP-seq
MIRT2335069	hsa-miR-3689c	CLIP-seq
MIRT2111794	hsa-miR-371-5p	CLIP-seq
MIRT2111795	hsa-miR-371b-5p	CLIP-seq
MIRT1376032	hsa-miR-377	CLIP-seq
MIRT2111796	hsa-miR-3916	CLIP-seq
MIRT2111797	hsa-miR-3973	CLIP-seq
MIRT1376034	hsa-miR-3975	CLIP-seq
MIRT1376038	hsa-miR-4284	CLIP-seq
MIRT1376039	hsa-miR-4432	CLIP-seq
MIRT2335070	hsa-miR-4433	CLIP-seq
MIRT2335071	hsa-miR-4465	CLIP-seq
MIRT2335072	hsa-miR-4502	CLIP-seq
MIRT1376041	hsa-miR-4517	CLIP-seq
MIRT1376043	hsa-miR-451b	CLIP-seq
MIRT2335073	hsa-miR-4685-5p	CLIP-seq
MIRT1376048	hsa-miR-4696	CLIP-seq
MIRT2335074	hsa-miR-4728-5p	CLIP-seq
MIRT1376053	hsa-miR-485-5p	CLIP-seq
MIRT2111804	hsa-miR-548c-3p	CLIP-seq
MIRT2111805	hsa-miR-548k	CLIP-seq
MIRT2111806	hsa-miR-548v	CLIP-seq
MIRT2111807	hsa-miR-610	CLIP-seq
MIRT2111809	hsa-miR-642b	CLIP-seq
MIRT1376059	hsa-miR-665	CLIP-seq
MIRT2335075	hsa-miR-668	CLIP-seq
MIRT2335076	hsa-miR-720	CLIP-seq
MIRT2335077	hsa-miR-875-5p	CLIP-seq
MIRT2335078	hsa-miR-944	CLIP-seq
MIRT2111779	hsa-miR-101	CLIP-seq
MIRT2111780	hsa-miR-1184	CLIP-seq
MIRT2111781	hsa-miR-1205	CLIP-seq
MIRT2111785	hsa-miR-139-5p	CLIP-seq
MIRT2111786	hsa-miR-144	CLIP-seq
MIRT2111788	hsa-miR-2467-3p	CLIP-seq
MIRT2111789	hsa-miR-3125	CLIP-seq
MIRT2111790	hsa-miR-3158-5p	CLIP-seq
MIRT2111791	hsa-miR-3185	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2111793	hsa-miR-3678-3p	CLIP-seq
MIRT2111794	hsa-miR-371-5p	CLIP-seq
MIRT2111795	hsa-miR-371b-5p	CLIP-seq
MIRT2111796	hsa-miR-3916	CLIP-seq
MIRT2111797	hsa-miR-3973	CLIP-seq
MIRT2111804	hsa-miR-548c-3p	CLIP-seq
MIRT2111805	hsa-miR-548k	CLIP-seq
MIRT2111808	hsa-miR-630	CLIP-seq
MIRT2460127	hsa-miR-3065-5p	CLIP-seq
MIRT2460128	hsa-miR-3200-5p	CLIP-seq
MIRT2460129	hsa-miR-340	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2460130	hsa-miR-4251	CLIP-seq
MIRT2460131	hsa-miR-4329	CLIP-seq
MIRT2460132	hsa-miR-545	CLIP-seq
MIRT2629117	hsa-miR-1228	CLIP-seq
MIRT2111784	hsa-miR-1283	CLIP-seq
MIRT2629118	hsa-miR-1301	CLIP-seq
MIRT1375997	hsa-miR-1304	CLIP-seq
MIRT1376004	hsa-miR-2054	CLIP-seq
MIRT2629119	hsa-miR-208a	CLIP-seq
MIRT2629120	hsa-miR-208b	CLIP-seq
MIRT2629121	hsa-miR-221	CLIP-seq
MIRT2629122	hsa-miR-222	CLIP-seq
MIRT1376006	hsa-miR-2467-5p	CLIP-seq
MIRT2335066	hsa-miR-31	CLIP-seq
MIRT1376016	hsa-miR-3135	CLIP-seq
MIRT2629123	hsa-miR-3145-5p	CLIP-seq
MIRT2629124	hsa-miR-3174	CLIP-seq
MIRT1376021	hsa-miR-3188	CLIP-seq
MIRT2629125	hsa-miR-323b-3p	CLIP-seq
MIRT2629126	hsa-miR-329	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2629127	hsa-miR-362-3p	CLIP-seq
MIRT2629128	hsa-miR-3667-5p	CLIP-seq
MIRT2335068	hsa-miR-3689a-3p	CLIP-seq
MIRT2335069	hsa-miR-3689c	CLIP-seq
MIRT1376034	hsa-miR-3975	CLIP-seq
MIRT2111798	hsa-miR-4266	CLIP-seq
MIRT2629129	hsa-miR-4282	CLIP-seq
MIRT2629130	hsa-miR-4421	CLIP-seq
MIRT2629131	hsa-miR-4660	CLIP-seq
MIRT2629132	hsa-miR-4684-5p	CLIP-seq
MIRT2335073	hsa-miR-4685-5p	CLIP-seq
MIRT2111801	hsa-miR-4695-5p	CLIP-seq
MIRT1376048	hsa-miR-4696	CLIP-seq
MIRT2335074	hsa-miR-4728-5p	CLIP-seq
MIRT2629133	hsa-miR-4764-3p	CLIP-seq
MIRT2111803	hsa-miR-4779	CLIP-seq
MIRT2629134	hsa-miR-4802-3p	CLIP-seq
MIRT1376053	hsa-miR-485-5p	CLIP-seq
MIRT2629135	hsa-miR-499-5p	CLIP-seq
MIRT2629136	hsa-miR-5047	CLIP-seq
MIRT2111804	hsa-miR-548c-3p	CLIP-seq
MIRT2629137	hsa-miR-593	CLIP-seq
MIRT2111810	hsa-miR-651	CLIP-seq
MIRT2629138	hsa-miR-766	CLIP-seq
MIRT2629139	hsa-miR-921	CLIP-seq
MIRT2629117	hsa-miR-1228	CLIP-seq
MIRT2111784	hsa-miR-1283	CLIP-seq
MIRT2629118	hsa-miR-1301	CLIP-seq
MIRT1376004	hsa-miR-2054	CLIP-seq
MIRT2629119	hsa-miR-208a	CLIP-seq
MIRT2629120	hsa-miR-208b	CLIP-seq
MIRT2629121	hsa-miR-221	CLIP-seq
MIRT2629122	hsa-miR-222	CLIP-seq
MIRT2629124	hsa-miR-3174	CLIP-seq
MIRT2629126	hsa-miR-329	CLIP-seq
MIRT2111792	hsa-miR-3613-3p	CLIP-seq
MIRT2629127	hsa-miR-362-3p	CLIP-seq
MIRT2629128	hsa-miR-3667-5p	CLIP-seq
MIRT2335068	hsa-miR-3689a-3p	CLIP-seq
MIRT2335069	hsa-miR-3689c	CLIP-seq
MIRT2111798	hsa-miR-4266	CLIP-seq
MIRT2629129	hsa-miR-4282	CLIP-seq
MIRT2629130	hsa-miR-4421	CLIP-seq
MIRT2629131	hsa-miR-4660	CLIP-seq
MIRT2629132	hsa-miR-4684-5p	CLIP-seq
MIRT2111801	hsa-miR-4695-5p	CLIP-seq
MIRT1376048	hsa-miR-4696	CLIP-seq
MIRT2335074	hsa-miR-4728-5p	CLIP-seq
MIRT2111803	hsa-miR-4779	CLIP-seq
MIRT2629134	hsa-miR-4802-3p	CLIP-seq
MIRT2629135	hsa-miR-499-5p	CLIP-seq
MIRT2629136	hsa-miR-5047	CLIP-seq
MIRT2629137	hsa-miR-593	CLIP-seq
MIRT2111810	hsa-miR-651	CLIP-seq
MIRT2629139	hsa-miR-921	CLIP-seq

Gene ontology (GO) Show/Hide all (15)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	32296183, 32814053
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IBA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005681	Component	Spliceosomal complex	IEA
GO:0005689	Component	U12-type spliceosomal complex	IBA
GO:0005689	Component	U12-type spliceosomal complex	IDA	15146077
GO:0005829	Component	Cytosol	IBA
GO:0005829	Component	Cytosol	IDA
GO:0006397	Process	MRNA processing	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0008380	Process	RNA splicing	IC	15146077
GO:0008380	Process	RNA splicing	IEA
GO:0046872	Function	Metal ion binding	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q6IEG0
• Protein name: U11/U12 small nuclear ribonucleoprotein 48 kDa protein (U11/U12 snRNP 48 kDa protein) (U11/U12-48K)
• Protein function: Likely involved in U12-type 5' splice site recognition.
• PDB: 2VY4 , 2VY5 , 8R7N , 8Y6O , 9GBW , 9GC0 , 9GCL
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF05253	zf-U11-48K	55 → 79	U11-48K-like CHHC zinc finger	Domain

• Sequence:

  MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPY
  DSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYENVKIPSITLNKDSQFQIIK
  QARTAVGKDSDCYNQRIYSSLPVEVPLNHKRFVCDLTQADRLALYDFVVEETKKKRSDSQ
  IIENDSDLFVDLAAKINQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEV
  IRDVINVHMEELSNHWQEEQEKAEDDAEKNEERRSASVDSRQSGGSYLDAECSRHRRDRS
  RSPHKRKRNKDKDKNCESRRRKERDGERHHSHKRRKQKI

• Sequence length: 339

Pathways

Reactome Pathway:

mRNA Splicing - Minor Pathway

Related Genes

No strongly related genes found yet for SNRNP48.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to SNRNP48.