SDC1 (syndecan 1)

Download as csv Download as pdf

Log in to bookmark this gene

Bookmark This Gene

Title Project / Tag (optional) Note (optional)

Cancel Save

On this page

Gene miRNA Transcription factors Gene ontology Other IDs Protein Pathways Associated diseases Related genes Diseases linked via similar genes

Gene

• Entrez ID: 6382
• Gene name: Syndecan 1
• Gene symbol: SDC1
• Synonyms (NCBI Gene): CD138, SDC, SYND1, syndecan
• Chromosome: 2
• Chromosome location: 2p24.1
• Summary: The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are req

miRNA Show/Hide all (412)

miRTarBase ID	miRNA	Experiments	Reference
MIRT007072	hsa-miR-10b-5p	Luciferase reporter assay	22573479
MIRT019998	hsa-miR-375	Microarray	20215506
MIRT021459	hsa-miR-9-5p	Microarray	17612493
MIRT045538	hsa-miR-149-5p	CLASH	23622248
MIRT052912	hsa-miR-143-3p	Luciferase reporter assay, qRT-PCR, Western blot	24722758
MIRT053346	hsa-miR-494-3p	Immunoblot, Luciferase reporter assay, qRT-PCR	23728345
MIRT007072	hsa-miR-10b-5p	Luciferase reporter assay	23206733
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT007072	hsa-miR-10b-5p	3'LIFE	25074381
MIRT007072	hsa-miR-10b-5p	3'LIFE	25074381
MIRT733585	hsa-miR-10a-5p	Luciferase reporter assay, qRT-PCR, Western blotting	32153518
MIRT733585	hsa-miR-10a-5p	Luciferase reporter assay, qRT-PCR, Western blotting	32153518
MIRT733936	hsa-miR-665	Western blotting, Microarray, Immunofluorescence, qRT-PCR, Flow cytometry	1
MIRT733936	hsa-miR-665	Flow cytometry, Immunofluorescence, Microarray, qRT-PCR, Western blotting	33042414
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT616062	hsa-miR-652-5p	HITS-CLIP	23824327
MIRT616061	hsa-miR-6732-3p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT614587	hsa-miR-1264	HITS-CLIP	23824327
MIRT614586	hsa-miR-4778-3p	HITS-CLIP	23824327
MIRT614585	hsa-miR-6740-3p	HITS-CLIP	23824327
MIRT614584	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT442574	hsa-miR-5582-5p	PAR-CLIP	22100165
MIRT442573	hsa-miR-4756-3p	PAR-CLIP	22100165
MIRT442572	hsa-miR-4480	PAR-CLIP	22100165
MIRT1331174	hsa-miR-1200	CLIP-seq
MIRT1331175	hsa-miR-1225-3p	CLIP-seq
MIRT1331176	hsa-miR-1233	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT1331178	hsa-miR-149	CLIP-seq
MIRT1331179	hsa-miR-182	CLIP-seq
MIRT1331180	hsa-miR-1915	CLIP-seq
MIRT1331181	hsa-miR-221	CLIP-seq
MIRT1331182	hsa-miR-222	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331188	hsa-miR-3064-5p	CLIP-seq
MIRT1331189	hsa-miR-3125	CLIP-seq
MIRT1331190	hsa-miR-3133	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT1331192	hsa-miR-3162-5p	CLIP-seq
MIRT1331193	hsa-miR-3163	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331195	hsa-miR-331-3p	CLIP-seq
MIRT1331196	hsa-miR-340	CLIP-seq
MIRT1331197	hsa-miR-34c-3p	CLIP-seq
MIRT1331198	hsa-miR-3646	CLIP-seq
MIRT1331199	hsa-miR-3650	CLIP-seq
MIRT1331200	hsa-miR-3684	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331203	hsa-miR-378g	CLIP-seq
MIRT1331204	hsa-miR-3913-3p	CLIP-seq
MIRT1331205	hsa-miR-3916	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT1331207	hsa-miR-3919	CLIP-seq
MIRT1331208	hsa-miR-3934	CLIP-seq
MIRT1331209	hsa-miR-3941	CLIP-seq
MIRT1331210	hsa-miR-3978	CLIP-seq
MIRT1331211	hsa-miR-4261	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT1331214	hsa-miR-4323	CLIP-seq
MIRT1331215	hsa-miR-4421	CLIP-seq
MIRT1331216	hsa-miR-4426	CLIP-seq
MIRT1331217	hsa-miR-4496	CLIP-seq
MIRT1331218	hsa-miR-4511	CLIP-seq
MIRT1331219	hsa-miR-451b	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT1331221	hsa-miR-4639-3p	CLIP-seq
MIRT1331222	hsa-miR-4647	CLIP-seq
MIRT1331223	hsa-miR-466	CLIP-seq
MIRT1331224	hsa-miR-4662b	CLIP-seq
MIRT1331225	hsa-miR-4672	CLIP-seq
MIRT1331226	hsa-miR-4685-5p	CLIP-seq
MIRT1331227	hsa-miR-4690-3p	CLIP-seq
MIRT1331228	hsa-miR-4719	CLIP-seq
MIRT1331229	hsa-miR-4722-3p	CLIP-seq
MIRT1331230	hsa-miR-4731-3p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT1331233	hsa-miR-4794	CLIP-seq
MIRT1331234	hsa-miR-4796-3p	CLIP-seq
MIRT1331235	hsa-miR-4801	CLIP-seq
MIRT1331236	hsa-miR-489	CLIP-seq
MIRT1331237	hsa-miR-494	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT1331243	hsa-miR-520g	CLIP-seq
MIRT1331244	hsa-miR-520h	CLIP-seq
MIRT1331245	hsa-miR-548aa	CLIP-seq
MIRT1331246	hsa-miR-548v	CLIP-seq
MIRT1331247	hsa-miR-552	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331249	hsa-miR-626	CLIP-seq
MIRT1331250	hsa-miR-635	CLIP-seq
MIRT1331251	hsa-miR-662	CLIP-seq
MIRT1331252	hsa-miR-759	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331254	hsa-miR-877	CLIP-seq
MIRT1331255	hsa-miR-9	CLIP-seq
MIRT1331256	hsa-miR-934	CLIP-seq
MIRT1331176	hsa-miR-1233	CLIP-seq
MIRT1331257	hsa-miR-1256	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT1331258	hsa-miR-1286	CLIP-seq
MIRT1331259	hsa-miR-133a	CLIP-seq
MIRT1331260	hsa-miR-133b	CLIP-seq
MIRT1331261	hsa-miR-1587	CLIP-seq
MIRT1331262	hsa-miR-1913	CLIP-seq
MIRT1331263	hsa-miR-19a	CLIP-seq
MIRT1331264	hsa-miR-19b	CLIP-seq
MIRT1331265	hsa-miR-2682	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331267	hsa-miR-31	CLIP-seq
MIRT1331268	hsa-miR-3180-5p	CLIP-seq
MIRT1331269	hsa-miR-3194-3p	CLIP-seq
MIRT1331270	hsa-miR-324-3p	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331271	hsa-miR-34a	CLIP-seq
MIRT1331272	hsa-miR-34c-5p	CLIP-seq
MIRT1331200	hsa-miR-3684	CLIP-seq
MIRT1331273	hsa-miR-3714	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331274	hsa-miR-377	CLIP-seq
MIRT1331203	hsa-miR-378g	CLIP-seq
MIRT1331275	hsa-miR-4267	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT1331276	hsa-miR-4292	CLIP-seq
MIRT1331216	hsa-miR-4426	CLIP-seq
MIRT1331277	hsa-miR-4459	CLIP-seq
MIRT1331278	hsa-miR-4488	CLIP-seq
MIRT1331279	hsa-miR-4492	CLIP-seq
MIRT1331280	hsa-miR-4498	CLIP-seq
MIRT1331281	hsa-miR-449a	CLIP-seq
MIRT1331282	hsa-miR-449b	CLIP-seq
MIRT1331283	hsa-miR-449c	CLIP-seq
MIRT1331284	hsa-miR-4505	CLIP-seq
MIRT1331219	hsa-miR-451b	CLIP-seq
MIRT1331285	hsa-miR-4525	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT1331222	hsa-miR-4647	CLIP-seq
MIRT1331286	hsa-miR-4655-3p	CLIP-seq
MIRT1331287	hsa-miR-4656	CLIP-seq
MIRT1331224	hsa-miR-4662b	CLIP-seq
MIRT1331288	hsa-miR-4675	CLIP-seq
MIRT1331289	hsa-miR-4697-5p	CLIP-seq
MIRT1331290	hsa-miR-4722-5p	CLIP-seq
MIRT1331291	hsa-miR-4731-5p	CLIP-seq
MIRT1331292	hsa-miR-4741	CLIP-seq
MIRT1331293	hsa-miR-4757-5p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT1331294	hsa-miR-519a	CLIP-seq
MIRT1331295	hsa-miR-519b-3p	CLIP-seq
MIRT1331296	hsa-miR-519c-3p	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331297	hsa-miR-637	CLIP-seq
MIRT1331298	hsa-miR-762	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331256	hsa-miR-934	CLIP-seq
MIRT2097903	hsa-miR-1179	CLIP-seq
MIRT2097904	hsa-miR-1229	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT2097905	hsa-miR-3150a-3p	CLIP-seq
MIRT2097906	hsa-miR-3175	CLIP-seq
MIRT2097907	hsa-miR-338-3p	CLIP-seq
MIRT2097908	hsa-miR-342-3p	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT2097909	hsa-miR-4310	CLIP-seq
MIRT2097910	hsa-miR-4667-5p	CLIP-seq
MIRT2097911	hsa-miR-4691-3p	CLIP-seq
MIRT2097912	hsa-miR-4700-5p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2097915	hsa-miR-561	CLIP-seq
MIRT2097916	hsa-miR-602	CLIP-seq
MIRT2097917	hsa-miR-939	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT2097918	hsa-miR-4645-5p	CLIP-seq
MIRT2097919	hsa-miR-4673	CLIP-seq
MIRT2097920	hsa-miR-4776-3p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2097921	hsa-miR-766	CLIP-seq
MIRT2322492	hsa-miR-10a	CLIP-seq
MIRT2322493	hsa-miR-10b	CLIP-seq
MIRT2322494	hsa-miR-1183	CLIP-seq
MIRT2322495	hsa-miR-1193	CLIP-seq
MIRT2322496	hsa-miR-1207-5p	CLIP-seq
MIRT1331257	hsa-miR-1256	CLIP-seq
MIRT2322497	hsa-miR-1273d	CLIP-seq
MIRT2322498	hsa-miR-1273e	CLIP-seq
MIRT1331177	hsa-miR-127-3p	CLIP-seq
MIRT2322499	hsa-miR-1324	CLIP-seq
MIRT1331259	hsa-miR-133a	CLIP-seq
MIRT1331260	hsa-miR-133b	CLIP-seq
MIRT2322500	hsa-miR-1909	CLIP-seq
MIRT2322501	hsa-miR-191	CLIP-seq
MIRT1331262	hsa-miR-1913	CLIP-seq
MIRT1331180	hsa-miR-1915	CLIP-seq
MIRT1331263	hsa-miR-19a	CLIP-seq
MIRT1331264	hsa-miR-19b	CLIP-seq
MIRT1331181	hsa-miR-221	CLIP-seq
MIRT1331182	hsa-miR-222	CLIP-seq
MIRT2322502	hsa-miR-2355-5p	CLIP-seq
MIRT1331265	hsa-miR-2682	CLIP-seq
MIRT2322503	hsa-miR-27a	CLIP-seq
MIRT2322504	hsa-miR-27b	CLIP-seq
MIRT2322505	hsa-miR-28-5p	CLIP-seq
MIRT2322506	hsa-miR-2861	CLIP-seq
MIRT1331266	hsa-miR-298	CLIP-seq
MIRT1331183	hsa-miR-302a	CLIP-seq
MIRT1331184	hsa-miR-302b	CLIP-seq
MIRT1331185	hsa-miR-302c	CLIP-seq
MIRT1331186	hsa-miR-302d	CLIP-seq
MIRT1331187	hsa-miR-302e	CLIP-seq
MIRT1331267	hsa-miR-31	CLIP-seq
MIRT1331189	hsa-miR-3125	CLIP-seq
MIRT2322507	hsa-miR-3139	CLIP-seq
MIRT1331191	hsa-miR-3148	CLIP-seq
MIRT2322508	hsa-miR-3151	CLIP-seq
MIRT2322509	hsa-miR-3157-5p	CLIP-seq
MIRT2322510	hsa-miR-3176	CLIP-seq
MIRT1331269	hsa-miR-3194-3p	CLIP-seq
MIRT1331270	hsa-miR-324-3p	CLIP-seq
MIRT1331194	hsa-miR-330-3p	CLIP-seq
MIRT1331271	hsa-miR-34a	CLIP-seq
MIRT1331272	hsa-miR-34c-5p	CLIP-seq
MIRT2322511	hsa-miR-3607-5p	CLIP-seq
MIRT2322512	hsa-miR-3613-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322514	hsa-miR-3679-3p	CLIP-seq
MIRT1331273	hsa-miR-3714	CLIP-seq
MIRT1331201	hsa-miR-372	CLIP-seq
MIRT1331202	hsa-miR-373	CLIP-seq
MIRT1331274	hsa-miR-377	CLIP-seq
MIRT1331205	hsa-miR-3916	CLIP-seq
MIRT1331206	hsa-miR-3918	CLIP-seq
MIRT1331207	hsa-miR-3919	CLIP-seq
MIRT2322515	hsa-miR-3922-3p	CLIP-seq
MIRT2322516	hsa-miR-3925-3p	CLIP-seq
MIRT2322517	hsa-miR-3944-5p	CLIP-seq
MIRT2322518	hsa-miR-3960	CLIP-seq
MIRT1331210	hsa-miR-3978	CLIP-seq
MIRT2322519	hsa-miR-4252	CLIP-seq
MIRT1331211	hsa-miR-4261	CLIP-seq
MIRT1331275	hsa-miR-4267	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq
MIRT1331212	hsa-miR-4274	CLIP-seq
MIRT2322521	hsa-miR-4277	CLIP-seq
MIRT1331213	hsa-miR-4286	CLIP-seq
MIRT2322522	hsa-miR-4467	CLIP-seq
MIRT1331217	hsa-miR-4496	CLIP-seq
MIRT1331281	hsa-miR-449a	CLIP-seq
MIRT1331282	hsa-miR-449b	CLIP-seq
MIRT1331283	hsa-miR-449c	CLIP-seq
MIRT1331218	hsa-miR-4511	CLIP-seq
MIRT2322523	hsa-miR-4512	CLIP-seq
MIRT2322524	hsa-miR-4514	CLIP-seq
MIRT2322525	hsa-miR-4534	CLIP-seq
MIRT1331220	hsa-miR-4633-3p	CLIP-seq
MIRT2097918	hsa-miR-4645-5p	CLIP-seq
MIRT1331225	hsa-miR-4672	CLIP-seq
MIRT2097919	hsa-miR-4673	CLIP-seq
MIRT1331226	hsa-miR-4685-5p	CLIP-seq
MIRT2097911	hsa-miR-4691-3p	CLIP-seq
MIRT2322526	hsa-miR-4692	CLIP-seq
MIRT2322527	hsa-miR-4700-3p	CLIP-seq
MIRT2322528	hsa-miR-4736	CLIP-seq
MIRT2322529	hsa-miR-4758-3p	CLIP-seq
MIRT2322530	hsa-miR-4759	CLIP-seq
MIRT2322531	hsa-miR-4763-3p	CLIP-seq
MIRT1331231	hsa-miR-4777-3p	CLIP-seq
MIRT1331232	hsa-miR-4777-5p	CLIP-seq
MIRT2322532	hsa-miR-4790-3p	CLIP-seq
MIRT2322533	hsa-miR-4802-5p	CLIP-seq
MIRT2322534	hsa-miR-485-3p	CLIP-seq
MIRT2322535	hsa-miR-488	CLIP-seq
MIRT2322536	hsa-miR-490-3p	CLIP-seq
MIRT1331237	hsa-miR-494	CLIP-seq
MIRT2322537	hsa-miR-512-5p	CLIP-seq
MIRT2322538	hsa-miR-513a-5p	CLIP-seq
MIRT1331294	hsa-miR-519a	CLIP-seq
MIRT1331295	hsa-miR-519b-3p	CLIP-seq
MIRT1331296	hsa-miR-519c-3p	CLIP-seq
MIRT1331238	hsa-miR-520a-3p	CLIP-seq
MIRT2097913	hsa-miR-520a-5p	CLIP-seq
MIRT1331239	hsa-miR-520b	CLIP-seq
MIRT1331240	hsa-miR-520c-3p	CLIP-seq
MIRT1331241	hsa-miR-520d-3p	CLIP-seq
MIRT1331242	hsa-miR-520e	CLIP-seq
MIRT2097914	hsa-miR-525-5p	CLIP-seq
MIRT2322539	hsa-miR-548ac	CLIP-seq
MIRT2322540	hsa-miR-548d-3p	CLIP-seq
MIRT1331246	hsa-miR-548v	CLIP-seq
MIRT2322541	hsa-miR-548z	CLIP-seq
MIRT2322542	hsa-miR-583	CLIP-seq
MIRT2322543	hsa-miR-589	CLIP-seq
MIRT2322544	hsa-miR-610	CLIP-seq
MIRT1331248	hsa-miR-624	CLIP-seq
MIRT1331249	hsa-miR-626	CLIP-seq
MIRT2322545	hsa-miR-656	CLIP-seq
MIRT2322546	hsa-miR-660	CLIP-seq
MIRT2322547	hsa-miR-708	CLIP-seq
MIRT1331252	hsa-miR-759	CLIP-seq
MIRT2097921	hsa-miR-766	CLIP-seq
MIRT1331253	hsa-miR-802	CLIP-seq
MIRT1331254	hsa-miR-877	CLIP-seq
MIRT2394126	hsa-miR-1270	CLIP-seq
MIRT2394127	hsa-miR-4434	CLIP-seq
MIRT2394128	hsa-miR-4516	CLIP-seq
MIRT2394129	hsa-miR-4531	CLIP-seq
MIRT2394130	hsa-miR-620	CLIP-seq
MIRT2097909	hsa-miR-4310	CLIP-seq
MIRT2466008	hsa-miR-1184	CLIP-seq
MIRT2466009	hsa-miR-1205	CLIP-seq
MIRT2466010	hsa-miR-1268	CLIP-seq
MIRT2466011	hsa-miR-1268b	CLIP-seq
MIRT1331258	hsa-miR-1286	CLIP-seq
MIRT2466012	hsa-miR-3158-5p	CLIP-seq
MIRT1331277	hsa-miR-4459	CLIP-seq
MIRT2466013	hsa-miR-4527	CLIP-seq
MIRT1331290	hsa-miR-4722-5p	CLIP-seq
MIRT2618676	hsa-miR-339-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq
MIRT2618677	hsa-miR-515-5p	CLIP-seq
MIRT2618678	hsa-miR-885-3p	CLIP-seq
MIRT2618676	hsa-miR-339-3p	CLIP-seq
MIRT2322513	hsa-miR-3622a-5p	CLIP-seq
MIRT2322520	hsa-miR-4269	CLIP-seq

Transcription factors

Transcription factor	Regulation	Reference
NFKB1	Activation	16132527
RELA	Activation	16132527

Gene ontology (GO) Show/Hide all (22)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	15292202, 16982797, 18093920, 23395182, 32814053, 33961781
GO:0005576	Component	Extracellular region	IEA
GO:0005796	Component	Golgi lumen	TAS
GO:0005886	Component	Plasma membrane	IEA
GO:0005886	Component	Plasma membrane	TAS	2324102
GO:0006898	Process	Receptor-mediated endocytosis	IEA
GO:0009897	Component	External side of plasma membrane	IEA
GO:0009986	Component	Cell surface	IBA
GO:0009986	Component	Cell surface	IDA	25063885
GO:0009986	Component	Cell surface	IEA
GO:0016020	Component	Membrane	IEA
GO:0016477	Process	Cell migration	IBA
GO:0038024	Function	Cargo receptor activity	IEA
GO:0042802	Function	Identical protein binding	IPI	18093920
GO:0043202	Component	Lysosomal lumen	TAS
GO:0048627	Process	Myoblast development	IEA
GO:0048627	Process	Myoblast development	ISS
GO:0055002	Process	Striated muscle cell development	IEP	9566955
GO:0060070	Process	Canonical Wnt signaling pathway	IEA
GO:0070062	Component	Extracellular exosome	HDA	19056867
GO:1903543	Process	Positive regulation of exosomal secretion	IMP	22660413
GO:1903553	Process	Positive regulation of extracellular exosome assembly	IMP	22660413

Other IDs

• MIM: 186355
• HGNC: 10658
• e!Ensembl: ENSG00000115884

Protein

• UniProt ID: P18827
• Protein name: Syndecan-1 (SYND1) (CD antigen CD138)
• Protein function: Cell surface proteoglycan that contains both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix (By similarity). Regulates exosome biogenesis in concert with SDCBP and PDCD6IP (PubMed:22660413). Ab
• PDB: 4GVC , 4GVD , 6EJE
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF01034	Syndecan	245 → 308	Syndecan domain	Family

• Tissue specificity: TISSUE SPECIFICITY: Detected in placenta (at protein level) (PubMed:32337544). Detected in fibroblasts (at protein level) (PubMed:36213313). {ECO:0000269|PubMed:32337544, ECO:0000269|PubMed:36213313}.
• Sequence:

  MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
  TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
  ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
  EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
  GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
  KPTKQEEFYA

• Sequence length: 310

Pathways

KEGG Pathway	Reactome Pathway
ECM-receptor interaction	A tetrasaccharide linker sequence is required for GAG synthesis
Cell adhesion molecules	HS-GAG biosynthesis
Cytoskeleton in muscle cells	HS-GAG degradation
Malaria	Cell surface interactions at the vascular wall
Proteoglycans in cancer	Syndecan interactions
Fluid shear stress and atherosclerosis	Defective B4GALT7 causes EDS, progeroid type
	Defective B3GAT3 causes JDSSDHD
	Defective EXT2 causes exostoses 2
	Defective EXT1 causes exostoses 1, TRPS2 and CHDS
	Defective B3GALT6 causes EDSP2 and SEMDJL1
	Other interleukin signaling
	Retinoid metabolism and transport

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Reference	Evidence Score
ANDROGENETIC ALOPECIA	—	GWAS catalog	30573740	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Long QT syndrome	Likely benign	ClinVar	—	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MESOTHELIOMA, MALIGNANT	—	CTD	27032653	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
OSTEOARTHRITIS, KNEE	—	GWAS catalog	40205036	★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Associations from Text Mining Show/Hide Text Mining Associations (325)
Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Adenocarcinoma	Adenocarcinoma	BEFREE	11743640, 14562280, 18006945, 23780687, 24549646, 25017879, 31417929		★☆☆☆☆ Found in Text Mining only
Adenocarcinoma of pancreas	Pancreatic adenocarcinoma	BEFREE	26627455		★☆☆☆☆ Found in Text Mining only
Adenocarcinoma, Clear Cell	Adenocarcinoma	BEFREE	26526579		★☆☆☆☆ Found in Text Mining only
Adenoid Cystic Carcinoma	Adenocarcinoma	BEFREE	18378436		★☆☆☆☆ Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma	B-cell Lymphoma	BEFREE	18925696, 22994707		★☆☆☆☆ Found in Text Mining only
Adult Hodgkin Lymphoma	Hodgkin Lymphoma	BEFREE	23988031, 26293675		★☆☆☆☆ Found in Text Mining only
Adult Medulloblastoma	Medulloblastoma	BEFREE	23728345		★☆☆☆☆ Found in Text Mining only
Alzheimer Disease	Alzheimer disease	Pubtator	30718543	Associate	★☆☆☆☆ Found in Text Mining only
Ameloblastoma	Ameloblastoma	Pubtator	25690860, 28390135, 29850393, 33917771, 38504068	Associate	★☆☆☆☆ Found in Text Mining only
Ameloblastoma	Ameloblastoma	BEFREE	28390135, 29850393		★☆☆☆☆ Found in Text Mining only

Related Genes

Sort by: Blended Diseases Pathways Evidence source

SDC4 16 shared pathwaysECM-receptor interaction, Cell adhesion molecules, Cytoskeleton in muscle cells, Proteoglycans in cancer, Fluid shear stress and atherosclerosis, A tetrasaccharide linker sequence is required for GAG synthesis, HS-GAG biosynthesis, HS-GAG degradation, Defective B4GALT7 causes EDS, progeroid type, Defective B3GAT3 causes JDSSDHD, Defective EXT2 causes exostoses 2, Defective EXT1 causes exostoses 1, TRPS2 and CHDS +4 more Related via 16 shared pathways including ECM-receptor interaction, Cell adhesion molecules. SDC2 16 shared pathwaysCell adhesion molecules, Cytoskeleton in muscle cells, Malaria, Proteoglycans in cancer, Fluid shear stress and atherosclerosis, A tetrasaccharide linker sequence is required for GAG synthesis, HS-GAG biosynthesis, HS-GAG degradation, Defective B4GALT7 causes EDS, progeroid type, Defective B3GAT3 causes JDSSDHD, Defective EXT2 causes exostoses 2, Defective EXT1 causes exostoses 1, TRPS2 and CHDS +4 more Related via 16 shared pathways including Cell adhesion molecules, Cytoskeleton in muscle cells. SDC3 13 shared pathwaysCell adhesion molecules, Cytoskeleton in muscle cells, A tetrasaccharide linker sequence is required for GAG synthesis, HS-GAG biosynthesis, HS-GAG degradation, Defective B4GALT7 causes EDS, progeroid type, Defective B3GAT3 causes JDSSDHD, Defective EXT2 causes exostoses 2, Defective EXT1 causes exostoses 1, TRPS2 and CHDS, Defective B3GALT6 causes EDSP2 and SEMDJL1, Retinoid metabolism and transport, Cell surface interactions at the vascular wall +1 more Related via 13 shared pathways including Cell adhesion molecules, Cytoskeleton in muscle cells. GPC1 12 shared pathwaysProteoglycans in cancer, Fluid shear stress and atherosclerosis, A tetrasaccharide linker sequence is required for GAG synthesis, HS-GAG biosynthesis, HS-GAG degradation, Defective B4GALT7 causes EDS, progeroid type, Defective B3GAT3 causes JDSSDHD, Defective EXT2 causes exostoses 2, Defective EXT1 causes exostoses 1, TRPS2 and CHDS, Defective B3GALT6 causes EDSP2 and SEMDJL1, Retinoid metabolism and transport, Cell surface interactions at the vascular wall Related via 12 shared pathways including Proteoglycans in cancer, Fluid shear stress and atherosclerosis. AGRN 11 shared pathwaysECM-receptor interaction, Cytoskeleton in muscle cells, A tetrasaccharide linker sequence is required for GAG synthesis, HS-GAG biosynthesis, HS-GAG degradation, Defective B4GALT7 causes EDS, progeroid type, Defective B3GAT3 causes JDSSDHD, Defective EXT2 causes exostoses 2, Defective EXT1 causes exostoses 1, TRPS2 and CHDS, Defective B3GALT6 causes EDSP2 and SEMDJL1, Retinoid metabolism and transport Related via 11 shared pathways including ECM-receptor interaction, Cytoskeleton in muscle cells.

Related Gene	Shared Diseases	Shared Disease Names	Shared Pathways	Shared Pathway Names	Shared Evidence Sources	Shared Evidence Names
SDC4	0	[]	16	["ECM-receptor interaction","Cell adhesion molecules","Cytoskeleton in muscle cells","Proteoglycans in cancer","Fluid shear stress and atherosclerosis","A tetrasaccharide linker sequence is required for GAG synthesis","HS-GAG biosynthesis","HS-GAG degradation","Defective B4GALT7 causes EDS, progeroid type","Defective B3GAT3 causes JDSSDHD","Defective EXT2 causes exostoses 2","Defective EXT1 causes exostoses 1, TRPS2 and CHDS"]	0	[]
SDC2	0	[]	16	["Cell adhesion molecules","Cytoskeleton in muscle cells","Malaria","Proteoglycans in cancer","Fluid shear stress and atherosclerosis","A tetrasaccharide linker sequence is required for GAG synthesis","HS-GAG biosynthesis","HS-GAG degradation","Defective B4GALT7 causes EDS, progeroid type","Defective B3GAT3 causes JDSSDHD","Defective EXT2 causes exostoses 2","Defective EXT1 causes exostoses 1, TRPS2 and CHDS"]	0	[]
SDC3	0	[]	13	["Cell adhesion molecules","Cytoskeleton in muscle cells","A tetrasaccharide linker sequence is required for GAG synthesis","HS-GAG biosynthesis","HS-GAG degradation","Defective B4GALT7 causes EDS, progeroid type","Defective B3GAT3 causes JDSSDHD","Defective EXT2 causes exostoses 2","Defective EXT1 causes exostoses 1, TRPS2 and CHDS","Defective B3GALT6 causes EDSP2 and SEMDJL1","Retinoid metabolism and transport","Cell surface interactions at the vascular wall"]	0	[]
GPC1	0	[]	12	["Proteoglycans in cancer","Fluid shear stress and atherosclerosis","A tetrasaccharide linker sequence is required for GAG synthesis","HS-GAG biosynthesis","HS-GAG degradation","Defective B4GALT7 causes EDS, progeroid type","Defective B3GAT3 causes JDSSDHD","Defective EXT2 causes exostoses 2","Defective EXT1 causes exostoses 1, TRPS2 and CHDS","Defective B3GALT6 causes EDSP2 and SEMDJL1","Retinoid metabolism and transport","Cell surface interactions at the vascular wall"]	0	[]
AGRN	0	[]	11	["ECM-receptor interaction","Cytoskeleton in muscle cells","A tetrasaccharide linker sequence is required for GAG synthesis","HS-GAG biosynthesis","HS-GAG degradation","Defective B4GALT7 causes EDS, progeroid type","Defective B3GAT3 causes JDSSDHD","Defective EXT2 causes exostoses 2","Defective EXT1 causes exostoses 1, TRPS2 and CHDS","Defective B3GALT6 causes EDSP2 and SEMDJL1","Retinoid metabolism and transport"]	0	[]

Diseases Linked via Similar Genes

Non-small-cell lung carcinoma Linked via 1 of 5 related genesSDC4 Psoriasis Linked via 1 of 5 related genesSDC4 Obstructive pulmonary disease Linked via 1 of 5 related genesSDC2 Cleft palate Linked via 1 of 5 related genesSDC2 Cleft lip Linked via 1 of 5 related genesSDC2

Disease	Linked Via (Gene Count)	Linked Via (Gene Names)
Non-small-cell lung carcinoma	1	["SDC4"]
Psoriasis	1	["SDC4"]
Obstructive pulmonary disease	1	["SDC2"]
Cleft palate	1	["SDC2"]
Cleft lip	1	["SDC2"]