SCRT2 (scratch family transcriptional repressor 2)

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Gene miRNA Gene ontology Other IDs Protein Related genes Diseases linked via similar genes

Gene

• Entrez ID: 85508
• Gene name: Scratch family transcriptional repressor 2
• Gene symbol: SCRT2
• Synonyms (NCBI Gene): ZNF898B
• Chromosome: 20
• Chromosome location: 20p13

miRNA Show/Hide all (81)

miRTarBase ID	miRNA	Experiments	Reference
MIRT621261	hsa-miR-3925-3p	HITS-CLIP	23824327
MIRT621259	hsa-miR-4474-3p	HITS-CLIP	23824327
MIRT621258	hsa-miR-2113	HITS-CLIP	23824327
MIRT621257	hsa-miR-5010-3p	HITS-CLIP	23824327
MIRT621261	hsa-miR-3925-3p	HITS-CLIP	23824327
MIRT621260	hsa-miR-7108-5p	HITS-CLIP	23824327
MIRT621259	hsa-miR-4474-3p	HITS-CLIP	23824327
MIRT621258	hsa-miR-2113	HITS-CLIP	23824327
MIRT621257	hsa-miR-5010-3p	HITS-CLIP	23824327
MIRT621261	hsa-miR-3925-3p	HITS-CLIP	23824327
MIRT621259	hsa-miR-4474-3p	HITS-CLIP	23824327
MIRT621258	hsa-miR-2113	HITS-CLIP	23824327
MIRT621257	hsa-miR-5010-3p	HITS-CLIP	23824327
MIRT621261	hsa-miR-3925-3p	HITS-CLIP	23824327
MIRT621260	hsa-miR-7108-5p	HITS-CLIP	23824327
MIRT621259	hsa-miR-4474-3p	HITS-CLIP	23824327
MIRT621258	hsa-miR-2113	HITS-CLIP	23824327
MIRT621257	hsa-miR-5010-3p	HITS-CLIP	23824327
MIRT1330908	hsa-miR-1193	CLIP-seq
MIRT1330909	hsa-miR-125a-5p	CLIP-seq
MIRT1330910	hsa-miR-125b	CLIP-seq
MIRT1330911	hsa-miR-1827	CLIP-seq
MIRT1330912	hsa-miR-185	CLIP-seq
MIRT1330913	hsa-miR-188-5p	CLIP-seq
MIRT1330914	hsa-miR-204	CLIP-seq
MIRT1330915	hsa-miR-211	CLIP-seq
MIRT1330916	hsa-miR-2110	CLIP-seq
MIRT1330917	hsa-miR-2114	CLIP-seq
MIRT1330918	hsa-miR-3178	CLIP-seq
MIRT1330919	hsa-miR-3179	CLIP-seq
MIRT1330920	hsa-miR-3202	CLIP-seq
MIRT1330921	hsa-miR-3691-5p	CLIP-seq
MIRT1330922	hsa-miR-3926	CLIP-seq
MIRT1330923	hsa-miR-4271	CLIP-seq
MIRT1330924	hsa-miR-4292	CLIP-seq
MIRT1330925	hsa-miR-4306	CLIP-seq
MIRT1330926	hsa-miR-4308	CLIP-seq
MIRT1330927	hsa-miR-4319	CLIP-seq
MIRT1330928	hsa-miR-4476	CLIP-seq
MIRT1330929	hsa-miR-4493	CLIP-seq
MIRT1330930	hsa-miR-4497	CLIP-seq
MIRT1330931	hsa-miR-4635	CLIP-seq
MIRT1330932	hsa-miR-4644	CLIP-seq
MIRT1330933	hsa-miR-4649-3p	CLIP-seq
MIRT1330934	hsa-miR-4725-3p	CLIP-seq
MIRT1330935	hsa-miR-4732-3p	CLIP-seq
MIRT1330936	hsa-miR-4736	CLIP-seq
MIRT1330937	hsa-miR-4738-3p	CLIP-seq
MIRT1330938	hsa-miR-4746-5p	CLIP-seq
MIRT1330939	hsa-miR-4752	CLIP-seq
MIRT1330940	hsa-miR-490-3p	CLIP-seq
MIRT1330941	hsa-miR-524-3p	CLIP-seq
MIRT1330942	hsa-miR-525-3p	CLIP-seq
MIRT1330943	hsa-miR-548s	CLIP-seq
MIRT1330944	hsa-miR-615-5p	CLIP-seq
MIRT1330945	hsa-miR-670	CLIP-seq
MIRT1330946	hsa-miR-889	CLIP-seq
MIRT1330947	hsa-miR-940	CLIP-seq
MIRT2097885	hsa-miR-1207-3p	CLIP-seq
MIRT2097886	hsa-miR-1254	CLIP-seq
MIRT1330916	hsa-miR-2110	CLIP-seq
MIRT2097887	hsa-miR-3116	CLIP-seq
MIRT2097888	hsa-miR-4254	CLIP-seq
MIRT1330923	hsa-miR-4271	CLIP-seq
MIRT1330934	hsa-miR-4725-3p	CLIP-seq
MIRT2097889	hsa-miR-4747-5p	CLIP-seq
MIRT2322372	hsa-miR-214	CLIP-seq
MIRT2322373	hsa-miR-2467-3p	CLIP-seq
MIRT2322374	hsa-miR-3135b	CLIP-seq
MIRT2322375	hsa-miR-3619-5p	CLIP-seq
MIRT2322376	hsa-miR-4291	CLIP-seq
MIRT2322377	hsa-miR-4633-3p	CLIP-seq
MIRT2322378	hsa-miR-761	CLIP-seq
MIRT2322379	hsa-miR-922	CLIP-seq
MIRT2097886	hsa-miR-1254	CLIP-seq
MIRT2618644	hsa-miR-2861	CLIP-seq
MIRT2097887	hsa-miR-3116	CLIP-seq
MIRT2618645	hsa-miR-3160-3p	CLIP-seq
MIRT2097888	hsa-miR-4254	CLIP-seq
MIRT2322377	hsa-miR-4633-3p	CLIP-seq
MIRT2618646	hsa-miR-4663	CLIP-seq

Gene ontology (GO) Show/Hide all (15)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	IEA
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	ISS
GO:0000785	Component	Chromatin	ISS
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0001227	Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	ISS
GO:0003677	Function	DNA binding	IEA
GO:0005634	Component	Nucleus	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0046872	Function	Metal ion binding	IEA
GO:0070888	Function	E-box binding	ISS
GO:1902042	Process	Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	ISS
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536
GO:2001222	Process	Regulation of neuron migration	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q9NQ03
• Protein name: Transcriptional repressor scratch 2 (Scratch homolog 2 zinc finger protein)
• Protein function: May be involved in transcriptional regulation.
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00096	zf-C2H2	212 → 234	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	240 → 262	Zinc finger, C2H2 type	Domain
  PF00096	zf-C2H2	155 → 177	Zinc finger, C2H2 type	Domain
  PF13912	zf-C2H2_6	185 → 209		Domain

• Sequence:

  MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
  KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
  RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
  DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
  GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
  TPAGPAS

• Sequence length: 307

Related Genes

No strongly related genes found yet for SCRT2.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to SCRT2.