RPUSD1 (RNA pseudouridine synthase domain containing 1)

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Gene miRNA Gene ontology Other IDs Protein Associated diseases Related genes Diseases linked via similar genes

Gene

• Entrez ID: 113000
• Gene name: RNA pseudouridine synthase domain containing 1
• Gene symbol: RPUSD1
• Synonyms (NCBI Gene): C16orf40, RLUCL
• Chromosome: 16
• Chromosome location: 16p13.3

miRNA Show/Hide all (182)

miRTarBase ID	miRNA	Experiments	Reference
MIRT1319134	hsa-miR-1224-3p	CLIP-seq
MIRT1319135	hsa-miR-1225-3p	CLIP-seq
MIRT1319136	hsa-miR-1233	CLIP-seq
MIRT1319137	hsa-miR-124	CLIP-seq
MIRT1319138	hsa-miR-1254	CLIP-seq
MIRT1319139	hsa-miR-125a-3p	CLIP-seq
MIRT1319140	hsa-miR-1273	CLIP-seq
MIRT1319141	hsa-miR-1275	CLIP-seq
MIRT1319142	hsa-miR-1289	CLIP-seq
MIRT1319143	hsa-miR-150	CLIP-seq
MIRT1319144	hsa-miR-1827	CLIP-seq
MIRT1319145	hsa-miR-1910	CLIP-seq
MIRT1319146	hsa-miR-2114	CLIP-seq
MIRT1319147	hsa-miR-214	CLIP-seq
MIRT1319148	hsa-miR-2278	CLIP-seq
MIRT1319149	hsa-miR-2467-3p	CLIP-seq
MIRT1319150	hsa-miR-3116	CLIP-seq
MIRT1319151	hsa-miR-3130-3p	CLIP-seq
MIRT1319152	hsa-miR-3137	CLIP-seq
MIRT1319153	hsa-miR-3173-5p	CLIP-seq
MIRT1319154	hsa-miR-3184	CLIP-seq
MIRT1319155	hsa-miR-3198	CLIP-seq
MIRT1319156	hsa-miR-320e	CLIP-seq
MIRT1319157	hsa-miR-3612	CLIP-seq
MIRT1319158	hsa-miR-3616-3p	CLIP-seq
MIRT1319159	hsa-miR-3619-3p	CLIP-seq
MIRT1319160	hsa-miR-3619-5p	CLIP-seq
MIRT1319161	hsa-miR-3622a-3p	CLIP-seq
MIRT1319162	hsa-miR-3622b-3p	CLIP-seq
MIRT1319163	hsa-miR-3622b-5p	CLIP-seq
MIRT1319164	hsa-miR-3648	CLIP-seq
MIRT1319165	hsa-miR-3649	CLIP-seq
MIRT1319166	hsa-miR-3661	CLIP-seq
MIRT1319167	hsa-miR-3688-5p	CLIP-seq
MIRT1319168	hsa-miR-3689d	CLIP-seq
MIRT1319169	hsa-miR-370	CLIP-seq
MIRT1319170	hsa-miR-423-5p	CLIP-seq
MIRT1319171	hsa-miR-4254	CLIP-seq
MIRT1319172	hsa-miR-4281	CLIP-seq
MIRT1319173	hsa-miR-4287	CLIP-seq
MIRT1319174	hsa-miR-4292	CLIP-seq
MIRT1319175	hsa-miR-4294	CLIP-seq
MIRT1319176	hsa-miR-4308	CLIP-seq
MIRT1319177	hsa-miR-4309	CLIP-seq
MIRT1319178	hsa-miR-4313	CLIP-seq
MIRT1319179	hsa-miR-4316	CLIP-seq
MIRT1319180	hsa-miR-4420	CLIP-seq
MIRT1319181	hsa-miR-4449	CLIP-seq
MIRT1319182	hsa-miR-4466	CLIP-seq
MIRT1319183	hsa-miR-4469	CLIP-seq
MIRT1319184	hsa-miR-4474-3p	CLIP-seq
MIRT1319185	hsa-miR-4485	CLIP-seq
MIRT1319186	hsa-miR-4488	CLIP-seq
MIRT1319187	hsa-miR-4504	CLIP-seq
MIRT1319188	hsa-miR-4519	CLIP-seq
MIRT1319189	hsa-miR-4525	CLIP-seq
MIRT1319190	hsa-miR-4530	CLIP-seq
MIRT1319191	hsa-miR-455-3p	CLIP-seq
MIRT1319192	hsa-miR-4648	CLIP-seq
MIRT1319193	hsa-miR-4665-5p	CLIP-seq
MIRT1319194	hsa-miR-4676-5p	CLIP-seq
MIRT1319195	hsa-miR-4679	CLIP-seq
MIRT1319196	hsa-miR-4685-3p	CLIP-seq
MIRT1319197	hsa-miR-4688	CLIP-seq
MIRT1319198	hsa-miR-4695-5p	CLIP-seq
MIRT1319199	hsa-miR-4697-5p	CLIP-seq
MIRT1319200	hsa-miR-4704-3p	CLIP-seq
MIRT1319201	hsa-miR-4711-5p	CLIP-seq
MIRT1319202	hsa-miR-4713-3p	CLIP-seq
MIRT1319203	hsa-miR-4718	CLIP-seq
MIRT1319204	hsa-miR-4721	CLIP-seq
MIRT1319205	hsa-miR-4723-5p	CLIP-seq
MIRT1319206	hsa-miR-4724-5p	CLIP-seq
MIRT1319207	hsa-miR-4726-3p	CLIP-seq
MIRT1319208	hsa-miR-4729	CLIP-seq
MIRT1319209	hsa-miR-4731-5p	CLIP-seq
MIRT1319210	hsa-miR-4746-3p	CLIP-seq
MIRT1319211	hsa-miR-4749-3p	CLIP-seq
MIRT1319212	hsa-miR-4758-3p	CLIP-seq
MIRT1319213	hsa-miR-4792	CLIP-seq
MIRT1319214	hsa-miR-4793-3p	CLIP-seq
MIRT1319215	hsa-miR-486-3p	CLIP-seq
MIRT1319216	hsa-miR-492	CLIP-seq
MIRT1319217	hsa-miR-506	CLIP-seq
MIRT1319218	hsa-miR-518d-5p	CLIP-seq
MIRT1319219	hsa-miR-519b-5p	CLIP-seq
MIRT1319220	hsa-miR-519c-5p	CLIP-seq
MIRT1319221	hsa-miR-520c-5p	CLIP-seq
MIRT1319222	hsa-miR-526a	CLIP-seq
MIRT1319223	hsa-miR-566	CLIP-seq
MIRT1319224	hsa-miR-575	CLIP-seq
MIRT1319225	hsa-miR-615-5p	CLIP-seq
MIRT1319226	hsa-miR-625	CLIP-seq
MIRT1319227	hsa-miR-631	CLIP-seq
MIRT1319228	hsa-miR-650	CLIP-seq
MIRT1319229	hsa-miR-661	CLIP-seq
MIRT1319230	hsa-miR-665	CLIP-seq
MIRT1319231	hsa-miR-675	CLIP-seq
MIRT1319232	hsa-miR-759	CLIP-seq
MIRT1319233	hsa-miR-761	CLIP-seq
MIRT1319234	hsa-miR-765	CLIP-seq
MIRT1319142	hsa-miR-1289	CLIP-seq
MIRT2094870	hsa-miR-1321	CLIP-seq
MIRT2094871	hsa-miR-147	CLIP-seq
MIRT1319146	hsa-miR-2114	CLIP-seq
MIRT1319154	hsa-miR-3184	CLIP-seq
MIRT1319155	hsa-miR-3198	CLIP-seq
MIRT2094872	hsa-miR-331-3p	CLIP-seq
MIRT2094873	hsa-miR-342-5p	CLIP-seq
MIRT1319161	hsa-miR-3622a-3p	CLIP-seq
MIRT1319162	hsa-miR-3622b-3p	CLIP-seq
MIRT2094874	hsa-miR-3911	CLIP-seq
MIRT1319170	hsa-miR-423-5p	CLIP-seq
MIRT1319173	hsa-miR-4287	CLIP-seq
MIRT1319174	hsa-miR-4292	CLIP-seq
MIRT1319175	hsa-miR-4294	CLIP-seq
MIRT2094875	hsa-miR-4300	CLIP-seq
MIRT1319176	hsa-miR-4308	CLIP-seq
MIRT1319177	hsa-miR-4309	CLIP-seq
MIRT2094876	hsa-miR-4419a	CLIP-seq
MIRT1319180	hsa-miR-4420	CLIP-seq
MIRT2094877	hsa-miR-4459	CLIP-seq
MIRT1319183	hsa-miR-4469	CLIP-seq
MIRT2094878	hsa-miR-4510	CLIP-seq
MIRT2094879	hsa-miR-4514	CLIP-seq
MIRT2094880	hsa-miR-4645-5p	CLIP-seq
MIRT1319192	hsa-miR-4648	CLIP-seq
MIRT2094881	hsa-miR-4651	CLIP-seq
MIRT2094882	hsa-miR-4654	CLIP-seq
MIRT2094883	hsa-miR-4664-5p	CLIP-seq
MIRT2094884	hsa-miR-4673	CLIP-seq
MIRT1319194	hsa-miR-4676-5p	CLIP-seq
MIRT1319195	hsa-miR-4679	CLIP-seq
MIRT1319196	hsa-miR-4685-3p	CLIP-seq
MIRT2094885	hsa-miR-4687-3p	CLIP-seq
MIRT2094886	hsa-miR-4692	CLIP-seq
MIRT1319200	hsa-miR-4704-3p	CLIP-seq
MIRT2094887	hsa-miR-4713-5p	CLIP-seq
MIRT1319206	hsa-miR-4724-5p	CLIP-seq
MIRT2094888	hsa-miR-4728-5p	CLIP-seq
MIRT1319208	hsa-miR-4729	CLIP-seq
MIRT2094889	hsa-miR-4739	CLIP-seq
MIRT2094890	hsa-miR-4755-3p	CLIP-seq
MIRT2094891	hsa-miR-4756-5p	CLIP-seq
MIRT1319212	hsa-miR-4758-3p	CLIP-seq
MIRT2094892	hsa-miR-4769-5p	CLIP-seq
MIRT2094893	hsa-miR-4779	CLIP-seq
MIRT1319224	hsa-miR-575	CLIP-seq
MIRT2094894	hsa-miR-608	CLIP-seq
MIRT2094895	hsa-miR-644	CLIP-seq
MIRT1319230	hsa-miR-665	CLIP-seq
MIRT1319234	hsa-miR-765	CLIP-seq
MIRT2094896	hsa-miR-920	CLIP-seq
MIRT2094871	hsa-miR-147	CLIP-seq
MIRT2319253	hsa-miR-3187-3p	CLIP-seq
MIRT2319254	hsa-miR-3189-3p	CLIP-seq
MIRT2094874	hsa-miR-3911	CLIP-seq
MIRT1319174	hsa-miR-4292	CLIP-seq
MIRT2094875	hsa-miR-4300	CLIP-seq
MIRT2319255	hsa-miR-432	CLIP-seq
MIRT1319180	hsa-miR-4420	CLIP-seq
MIRT2319256	hsa-miR-4435	CLIP-seq
MIRT2094879	hsa-miR-4514	CLIP-seq
MIRT2319257	hsa-miR-4529-5p	CLIP-seq
MIRT2094880	hsa-miR-4645-5p	CLIP-seq
MIRT1319192	hsa-miR-4648	CLIP-seq
MIRT2094882	hsa-miR-4654	CLIP-seq
MIRT2094884	hsa-miR-4673	CLIP-seq
MIRT1319194	hsa-miR-4676-5p	CLIP-seq
MIRT2094885	hsa-miR-4687-3p	CLIP-seq
MIRT2094886	hsa-miR-4692	CLIP-seq
MIRT2319258	hsa-miR-4701-5p	CLIP-seq
MIRT1319200	hsa-miR-4704-3p	CLIP-seq
MIRT1319206	hsa-miR-4724-5p	CLIP-seq
MIRT2094890	hsa-miR-4755-3p	CLIP-seq
MIRT2094892	hsa-miR-4769-5p	CLIP-seq
MIRT2319259	hsa-miR-548s	CLIP-seq
MIRT1319224	hsa-miR-575	CLIP-seq
MIRT2319260	hsa-miR-588	CLIP-seq
MIRT2094895	hsa-miR-644	CLIP-seq
MIRT2094896	hsa-miR-920	CLIP-seq
MIRT2319261	hsa-miR-940	CLIP-seq

Gene ontology (GO) Show/Hide all (7)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000455	Process	Enzyme-directed rRNA pseudouridine synthesis	IBA
GO:0001522	Process	Pseudouridine synthesis	IEA
GO:0003723	Function	RNA binding	IEA
GO:0005515	Function	Protein binding	IPI	32814053
GO:0009451	Process	RNA modification	IEA
GO:0009982	Function	Pseudouridine synthase activity	IBA
GO:0009982	Function	Pseudouridine synthase activity	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q9UJJ7
• Protein name: RNA pseudouridylate synthase domain-containing protein 1 (Ribosomal large subunit pseudouridine synthase C-like protein)
• PDB: 5VBB
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00849	PseudoU_synth_2	17 → 182	RNA pseudouridylate synthase	Family

• Sequence:

  MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
  RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR
  NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC
  SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP
  HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL
  QWLSEWTLEPDS

• Sequence length: 312

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Reference	Evidence Score
Prostate cancer	Uncertain significance	ClinVar	—	★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Associations from Text Mining
Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Basal Cell Nevus Syndrome	Basal cell nevus syndrome	Pubtator	29081410	Associate	★☆☆☆☆ Found in Text Mining only
Breast Neoplasms	Breast neoplasm	Pubtator	35779338	Associate	★☆☆☆☆ Found in Text Mining only

Related Genes

No strongly related genes found yet for RPUSD1.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to RPUSD1.