RPRD1B (regulation of nuclear pre-mRNA domain containing 1B)

Download as csv Download as pdf

Log in to save this analysis

Save This Analysis

Title Project / Tag (optional) Note (optional)

Cancel Save

On this page

Gene miRNA Gene ontology Other IDs Protein Pathways Diseases linked via similar genes

Gene

• Entrez ID: 58490
• Gene name: Regulation of nuclear pre-mRNA domain containing 1B
• Gene symbol: RPRD1B
• Synonyms (NCBI Gene): C20orf77, CREPT, K-H, Kub5-Hera, NET60, dJ1057B20.2
• Chromosome: 20
• Chromosome location: 20q11.23

miRNA Show/Hide all (304)

miRTarBase ID	miRNA	Experiments	Reference
MIRT020154	hsa-miR-130b-3p	Sequencing	20371350
MIRT022922	hsa-miR-124-3p	Proteomics;Microarray	18668037
MIRT027086	hsa-miR-103a-3p	Sequencing	20371350
MIRT028504	hsa-miR-30a-5p	Proteomics	18668040
MIRT031629	hsa-miR-16-5p	Proteomics	18668040
MIRT049853	hsa-miR-33a-5p	CLASH	23622248
MIRT031629	hsa-miR-16-5p	PAR-CLIP	26701625
MIRT1317381	hsa-miR-103a	CLIP-seq
MIRT1317382	hsa-miR-107	CLIP-seq
MIRT1317383	hsa-miR-1208	CLIP-seq
MIRT1317384	hsa-miR-1228	CLIP-seq
MIRT1317385	hsa-miR-1229	CLIP-seq
MIRT1317386	hsa-miR-1271	CLIP-seq
MIRT1317387	hsa-miR-1275	CLIP-seq
MIRT1317388	hsa-miR-127-5p	CLIP-seq
MIRT1317389	hsa-miR-1299	CLIP-seq
MIRT1317390	hsa-miR-1304	CLIP-seq
MIRT1317391	hsa-miR-1321	CLIP-seq
MIRT1317392	hsa-miR-145	CLIP-seq
MIRT1317393	hsa-miR-147	CLIP-seq
MIRT1317394	hsa-miR-15a	CLIP-seq
MIRT1317395	hsa-miR-15b	CLIP-seq
MIRT1317396	hsa-miR-16	CLIP-seq
MIRT1317397	hsa-miR-182	CLIP-seq
MIRT1317398	hsa-miR-183	CLIP-seq
MIRT1317399	hsa-miR-195	CLIP-seq
MIRT1317400	hsa-miR-205	CLIP-seq
MIRT1317401	hsa-miR-2110	CLIP-seq
MIRT1317402	hsa-miR-2117	CLIP-seq
MIRT1317403	hsa-miR-2467-5p	CLIP-seq
MIRT1317404	hsa-miR-3148	CLIP-seq
MIRT1317405	hsa-miR-3150a-3p	CLIP-seq
MIRT1317406	hsa-miR-3150b-3p	CLIP-seq
MIRT1317407	hsa-miR-3151	CLIP-seq
MIRT1317408	hsa-miR-3154	CLIP-seq
MIRT1317409	hsa-miR-3173-3p	CLIP-seq
MIRT1317410	hsa-miR-3175	CLIP-seq
MIRT1317411	hsa-miR-3185	CLIP-seq
MIRT1317412	hsa-miR-3188	CLIP-seq
MIRT1317413	hsa-miR-3202	CLIP-seq
MIRT1317414	hsa-miR-331-5p	CLIP-seq
MIRT1317415	hsa-miR-340	CLIP-seq
MIRT1317416	hsa-miR-34c-3p	CLIP-seq
MIRT1317417	hsa-miR-3545-3p	CLIP-seq
MIRT1317418	hsa-miR-3647-3p	CLIP-seq
MIRT1317419	hsa-miR-3653	CLIP-seq
MIRT1317420	hsa-miR-3658	CLIP-seq
MIRT1317421	hsa-miR-3688-3p	CLIP-seq
MIRT1317422	hsa-miR-383	CLIP-seq
MIRT1317423	hsa-miR-3908	CLIP-seq
MIRT1317424	hsa-miR-3911	CLIP-seq
MIRT1317425	hsa-miR-3914	CLIP-seq
MIRT1317426	hsa-miR-3915	CLIP-seq
MIRT1317427	hsa-miR-3919	CLIP-seq
MIRT1317428	hsa-miR-3921	CLIP-seq
MIRT1317429	hsa-miR-3928	CLIP-seq
MIRT1317430	hsa-miR-3929	CLIP-seq
MIRT1317431	hsa-miR-3975	CLIP-seq
MIRT1317432	hsa-miR-3978	CLIP-seq
MIRT1317433	hsa-miR-424	CLIP-seq
MIRT1317434	hsa-miR-4252	CLIP-seq
MIRT1317435	hsa-miR-4253	CLIP-seq
MIRT1317436	hsa-miR-4273	CLIP-seq
MIRT1317437	hsa-miR-4289	CLIP-seq
MIRT1317438	hsa-miR-4303	CLIP-seq
MIRT1317439	hsa-miR-433	CLIP-seq
MIRT1317440	hsa-miR-4419b	CLIP-seq
MIRT1317441	hsa-miR-4428	CLIP-seq
MIRT1317442	hsa-miR-4434	CLIP-seq
MIRT1317443	hsa-miR-4447	CLIP-seq
MIRT1317444	hsa-miR-4470	CLIP-seq
MIRT1317445	hsa-miR-4472	CLIP-seq
MIRT1317446	hsa-miR-4478	CLIP-seq
MIRT1317447	hsa-miR-4486	CLIP-seq
MIRT1317448	hsa-miR-4492	CLIP-seq
MIRT1317449	hsa-miR-4498	CLIP-seq
MIRT1317450	hsa-miR-4505	CLIP-seq
MIRT1317451	hsa-miR-4516	CLIP-seq
MIRT1317452	hsa-miR-4517	CLIP-seq
MIRT1317453	hsa-miR-4525	CLIP-seq
MIRT1317454	hsa-miR-4531	CLIP-seq
MIRT1317455	hsa-miR-4533	CLIP-seq
MIRT1317456	hsa-miR-4539	CLIP-seq
MIRT1317457	hsa-miR-4635	CLIP-seq
MIRT1317458	hsa-miR-4649-3p	CLIP-seq
MIRT1317459	hsa-miR-4651	CLIP-seq
MIRT1317460	hsa-miR-4653-5p	CLIP-seq
MIRT1317461	hsa-miR-4665-5p	CLIP-seq
MIRT1317462	hsa-miR-4677-5p	CLIP-seq
MIRT1317463	hsa-miR-4678	CLIP-seq
MIRT1317464	hsa-miR-4709-3p	CLIP-seq
MIRT1317465	hsa-miR-4712-3p	CLIP-seq
MIRT1317466	hsa-miR-4722-5p	CLIP-seq
MIRT1317467	hsa-miR-4723-5p	CLIP-seq
MIRT1317468	hsa-miR-4731-5p	CLIP-seq
MIRT1317469	hsa-miR-4739	CLIP-seq
MIRT1317470	hsa-miR-4747-5p	CLIP-seq
MIRT1317471	hsa-miR-4756-3p	CLIP-seq
MIRT1317472	hsa-miR-4756-5p	CLIP-seq
MIRT1317473	hsa-miR-4762-3p	CLIP-seq
MIRT1317474	hsa-miR-4768-3p	CLIP-seq
MIRT1317475	hsa-miR-4782-5p	CLIP-seq
MIRT1317476	hsa-miR-4784	CLIP-seq
MIRT1317477	hsa-miR-485-5p	CLIP-seq
MIRT1317478	hsa-miR-491-3p	CLIP-seq
MIRT1317479	hsa-miR-491-5p	CLIP-seq
MIRT1317480	hsa-miR-497	CLIP-seq
MIRT1317481	hsa-miR-516b	CLIP-seq
MIRT1317482	hsa-miR-519a	CLIP-seq
MIRT1317483	hsa-miR-519b-3p	CLIP-seq
MIRT1317484	hsa-miR-519c-3p	CLIP-seq
MIRT1317485	hsa-miR-526b	CLIP-seq
MIRT1317486	hsa-miR-545	CLIP-seq
MIRT1317487	hsa-miR-548aa	CLIP-seq
MIRT1317488	hsa-miR-550a	CLIP-seq
MIRT1317489	hsa-miR-578	CLIP-seq
MIRT1317490	hsa-miR-593	CLIP-seq
MIRT1317491	hsa-miR-608	CLIP-seq
MIRT1317492	hsa-miR-625	CLIP-seq
MIRT1317493	hsa-miR-637	CLIP-seq
MIRT1317494	hsa-miR-644	CLIP-seq
MIRT1317495	hsa-miR-671-5p	CLIP-seq
MIRT1317496	hsa-miR-759	CLIP-seq
MIRT1317497	hsa-miR-762	CLIP-seq
MIRT1317498	hsa-miR-875-3p	CLIP-seq
MIRT1317499	hsa-miR-939	CLIP-seq
MIRT1317500	hsa-miR-96	CLIP-seq
MIRT1317381	hsa-miR-103a	CLIP-seq
MIRT1317382	hsa-miR-107	CLIP-seq
MIRT1317387	hsa-miR-1275	CLIP-seq
MIRT2094269	hsa-miR-1287	CLIP-seq
MIRT1317389	hsa-miR-1299	CLIP-seq
MIRT1317390	hsa-miR-1304	CLIP-seq
MIRT2094270	hsa-miR-1324	CLIP-seq
MIRT2094271	hsa-miR-154	CLIP-seq
MIRT1317394	hsa-miR-15a	CLIP-seq
MIRT1317395	hsa-miR-15b	CLIP-seq
MIRT1317396	hsa-miR-16	CLIP-seq
MIRT2094272	hsa-miR-1912	CLIP-seq
MIRT2094273	hsa-miR-1914	CLIP-seq
MIRT1317399	hsa-miR-195	CLIP-seq
MIRT1317401	hsa-miR-2110	CLIP-seq
MIRT2094274	hsa-miR-2277-3p	CLIP-seq
MIRT2094275	hsa-miR-3138	CLIP-seq
MIRT2094276	hsa-miR-3144-5p	CLIP-seq
MIRT1317404	hsa-miR-3148	CLIP-seq
MIRT1317405	hsa-miR-3150a-3p	CLIP-seq
MIRT1317407	hsa-miR-3151	CLIP-seq
MIRT2094277	hsa-miR-3157-5p	CLIP-seq
MIRT2094278	hsa-miR-3160-5p	CLIP-seq
MIRT1317410	hsa-miR-3175	CLIP-seq
MIRT2094279	hsa-miR-3191	CLIP-seq
MIRT1317413	hsa-miR-3202	CLIP-seq
MIRT2094280	hsa-miR-3591-5p	CLIP-seq
MIRT2094281	hsa-miR-3613-3p	CLIP-seq
MIRT1317418	hsa-miR-3647-3p	CLIP-seq
MIRT2094282	hsa-miR-3652	CLIP-seq
MIRT2094283	hsa-miR-3663-5p	CLIP-seq
MIRT1317421	hsa-miR-3688-3p	CLIP-seq
MIRT1317422	hsa-miR-383	CLIP-seq
MIRT2094284	hsa-miR-3940-5p	CLIP-seq
MIRT1317433	hsa-miR-424	CLIP-seq
MIRT1317435	hsa-miR-4253	CLIP-seq
MIRT2094285	hsa-miR-4315	CLIP-seq
MIRT2094286	hsa-miR-4330	CLIP-seq
MIRT2094287	hsa-miR-4430	CLIP-seq
MIRT2094288	hsa-miR-4444	CLIP-seq
MIRT1317443	hsa-miR-4447	CLIP-seq
MIRT1317445	hsa-miR-4472	CLIP-seq
MIRT2094289	hsa-miR-4474-3p	CLIP-seq
MIRT1317450	hsa-miR-4505	CLIP-seq
MIRT2094290	hsa-miR-4507	CLIP-seq
MIRT1317452	hsa-miR-4517	CLIP-seq
MIRT1317453	hsa-miR-4525	CLIP-seq
MIRT1317455	hsa-miR-4533	CLIP-seq
MIRT1317459	hsa-miR-4651	CLIP-seq
MIRT2094291	hsa-miR-4652-5p	CLIP-seq
MIRT2094292	hsa-miR-4662a-5p	CLIP-seq
MIRT1317461	hsa-miR-4665-5p	CLIP-seq
MIRT2094293	hsa-miR-4704-5p	CLIP-seq
MIRT1317466	hsa-miR-4722-5p	CLIP-seq
MIRT1317467	hsa-miR-4723-5p	CLIP-seq
MIRT2094294	hsa-miR-4760-3p	CLIP-seq
MIRT2094295	hsa-miR-4764-3p	CLIP-seq
MIRT1317474	hsa-miR-4768-3p	CLIP-seq
MIRT2094296	hsa-miR-4772-5p	CLIP-seq
MIRT1317475	hsa-miR-4782-5p	CLIP-seq
MIRT2094297	hsa-miR-4796-5p	CLIP-seq
MIRT2094298	hsa-miR-4800-5p	CLIP-seq
MIRT2094299	hsa-miR-486-3p	CLIP-seq
MIRT1317479	hsa-miR-491-5p	CLIP-seq
MIRT2094300	hsa-miR-492	CLIP-seq
MIRT1317480	hsa-miR-497	CLIP-seq
MIRT2094301	hsa-miR-501-3p	CLIP-seq
MIRT2094302	hsa-miR-502-3p	CLIP-seq
MIRT1317481	hsa-miR-516b	CLIP-seq
MIRT2094303	hsa-miR-544	CLIP-seq
MIRT1317486	hsa-miR-545	CLIP-seq
MIRT1317487	hsa-miR-548aa	CLIP-seq
MIRT2094304	hsa-miR-601	CLIP-seq
MIRT2094305	hsa-miR-604	CLIP-seq
MIRT1317491	hsa-miR-608	CLIP-seq
MIRT1317492	hsa-miR-625	CLIP-seq
MIRT2094306	hsa-miR-629	CLIP-seq
MIRT2094307	hsa-miR-647	CLIP-seq
MIRT1317495	hsa-miR-671-5p	CLIP-seq
MIRT2094308	hsa-miR-767-3p	CLIP-seq
MIRT1317498	hsa-miR-875-3p	CLIP-seq
MIRT1317499	hsa-miR-939	CLIP-seq
MIRT1317381	hsa-miR-103a	CLIP-seq
MIRT1317382	hsa-miR-107	CLIP-seq
MIRT1317387	hsa-miR-1275	CLIP-seq
MIRT2094269	hsa-miR-1287	CLIP-seq
MIRT1317394	hsa-miR-15a	CLIP-seq
MIRT1317395	hsa-miR-15b	CLIP-seq
MIRT1317396	hsa-miR-16	CLIP-seq
MIRT2094273	hsa-miR-1914	CLIP-seq
MIRT1317399	hsa-miR-195	CLIP-seq
MIRT1317401	hsa-miR-2110	CLIP-seq
MIRT1317405	hsa-miR-3150a-3p	CLIP-seq
MIRT1317410	hsa-miR-3175	CLIP-seq
MIRT2318876	hsa-miR-3616-5p	CLIP-seq
MIRT1317418	hsa-miR-3647-3p	CLIP-seq
MIRT2318877	hsa-miR-3647-5p	CLIP-seq
MIRT2094282	hsa-miR-3652	CLIP-seq
MIRT2318878	hsa-miR-371-5p	CLIP-seq
MIRT1317433	hsa-miR-424	CLIP-seq
MIRT2094286	hsa-miR-4330	CLIP-seq
MIRT2318879	hsa-miR-4422	CLIP-seq
MIRT2318880	hsa-miR-4424	CLIP-seq
MIRT2094287	hsa-miR-4430	CLIP-seq
MIRT1317443	hsa-miR-4447	CLIP-seq
MIRT1317445	hsa-miR-4472	CLIP-seq
MIRT1317447	hsa-miR-4486	CLIP-seq
MIRT1317450	hsa-miR-4505	CLIP-seq
MIRT1317452	hsa-miR-4517	CLIP-seq
MIRT1317453	hsa-miR-4525	CLIP-seq
MIRT1317459	hsa-miR-4651	CLIP-seq
MIRT1317461	hsa-miR-4665-5p	CLIP-seq
MIRT2318881	hsa-miR-4672	CLIP-seq
MIRT1317464	hsa-miR-4709-3p	CLIP-seq
MIRT1317467	hsa-miR-4723-5p	CLIP-seq
MIRT2318882	hsa-miR-4729	CLIP-seq
MIRT2318883	hsa-miR-4795-5p	CLIP-seq
MIRT2318884	hsa-miR-4797-5p	CLIP-seq
MIRT2094300	hsa-miR-492	CLIP-seq
MIRT1317480	hsa-miR-497	CLIP-seq
MIRT2094301	hsa-miR-501-3p	CLIP-seq
MIRT2094302	hsa-miR-502-3p	CLIP-seq
MIRT1317486	hsa-miR-545	CLIP-seq
MIRT2318885	hsa-miR-573	CLIP-seq
MIRT2318886	hsa-miR-579	CLIP-seq
MIRT1317491	hsa-miR-608	CLIP-seq
MIRT1317492	hsa-miR-625	CLIP-seq
MIRT2094307	hsa-miR-647	CLIP-seq
MIRT2094308	hsa-miR-767-3p	CLIP-seq
MIRT1317499	hsa-miR-939	CLIP-seq
MIRT2094301	hsa-miR-501-3p	CLIP-seq
MIRT2094302	hsa-miR-502-3p	CLIP-seq
MIRT2094288	hsa-miR-4444	CLIP-seq
MIRT2614600	hsa-miR-1302	CLIP-seq
MIRT2094270	hsa-miR-1324	CLIP-seq
MIRT2094272	hsa-miR-1912	CLIP-seq
MIRT2094273	hsa-miR-1914	CLIP-seq
MIRT2094274	hsa-miR-2277-3p	CLIP-seq
MIRT2614601	hsa-miR-300	CLIP-seq
MIRT2614602	hsa-miR-3121-3p	CLIP-seq
MIRT2094275	hsa-miR-3138	CLIP-seq
MIRT2094276	hsa-miR-3144-5p	CLIP-seq
MIRT1317407	hsa-miR-3151	CLIP-seq
MIRT2094279	hsa-miR-3191	CLIP-seq
MIRT2614603	hsa-miR-3192	CLIP-seq
MIRT2094280	hsa-miR-3591-5p	CLIP-seq
MIRT2614604	hsa-miR-3682-5p	CLIP-seq
MIRT2614605	hsa-miR-381	CLIP-seq
MIRT2614606	hsa-miR-3942-3p	CLIP-seq
MIRT2614607	hsa-miR-425	CLIP-seq
MIRT2614608	hsa-miR-4298	CLIP-seq
MIRT2614609	hsa-miR-4314	CLIP-seq
MIRT2614610	hsa-miR-4318	CLIP-seq
MIRT2094288	hsa-miR-4444	CLIP-seq
MIRT1317443	hsa-miR-4447	CLIP-seq
MIRT1317445	hsa-miR-4472	CLIP-seq
MIRT2614611	hsa-miR-4540	CLIP-seq
MIRT2614612	hsa-miR-4632	CLIP-seq
MIRT2614613	hsa-miR-4646-5p	CLIP-seq
MIRT2094291	hsa-miR-4652-5p	CLIP-seq
MIRT2094292	hsa-miR-4662a-5p	CLIP-seq
MIRT2614614	hsa-miR-4666-3p	CLIP-seq
MIRT2614615	hsa-miR-4693-5p	CLIP-seq
MIRT2614616	hsa-miR-4799-5p	CLIP-seq
MIRT2094298	hsa-miR-4800-5p	CLIP-seq
MIRT1317479	hsa-miR-491-5p	CLIP-seq
MIRT2094300	hsa-miR-492	CLIP-seq
MIRT2094301	hsa-miR-501-3p	CLIP-seq
MIRT2094302	hsa-miR-502-3p	CLIP-seq
MIRT2614617	hsa-miR-648	CLIP-seq
MIRT2094308	hsa-miR-767-3p	CLIP-seq
MIRT2614618	hsa-miR-889	CLIP-seq
MIRT2614619	hsa-miR-892a	CLIP-seq
MIRT2094288	hsa-miR-4444	CLIP-seq
MIRT2614612	hsa-miR-4632	CLIP-seq
MIRT2094300	hsa-miR-492	CLIP-seq
MIRT2094308	hsa-miR-767-3p	CLIP-seq

Gene ontology (GO) Show/Hide all (19)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000993	Function	RNA polymerase II complex binding	IBA
GO:0000993	Function	RNA polymerase II complex binding	IDA	22264791
GO:0001111	Process	RNA polymerase II promoter clearance	IEA
GO:0001111	Process	RNA polymerase II promoter clearance	IMP	22231121
GO:0005515	Function	Protein binding	IPI	22264791, 24981860, 24997600, 28514442, 32296183, 33961781
GO:0005634	Component	Nucleus	IDA	22231121, 22264791
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0008284	Process	Positive regulation of cell population proliferation	IDA	22264791
GO:0010564	Process	Regulation of cell cycle process	IDA	22264791
GO:0031124	Process	MRNA 3'-end processing	IBA
GO:0042802	Function	Identical protein binding	IEA
GO:0042802	Function	Identical protein binding	IPI	24997600, 32296183
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	22264791
GO:0097550	Component	Transcription preinitiation complex	IDA	22231121
GO:0097550	Component	Transcription preinitiation complex	IEA
GO:0099122	Function	RNA polymerase II C-terminal domain binding	IEA

Other IDs

• MIM: 614694
• HGNC: 16209
• e!Ensembl: ENSG00000101413

Protein

• UniProt ID: Q9NQG5
• Protein name: Regulation of nuclear pre-mRNA domain-containing protein 1B (Cell cycle-related and expression-elevated protein in tumor)
• Protein function: Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD by RPAP2. Transcriptional regulator which enhances expression of CCND1. P
• PDB: 4FLA , 4FU3 , 4HFG , 4NAD , 4Q94 , 4Q96 , 9B9L
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF16566	CREPT	178 → 324	Cell-cycle alteration and expression-elevated protein in tumour	Domain
  PF04818	CID	7 → 125	CID domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Preferentially expressed in a range of tumor tissues including colon, lung, liver, breast, prostate, stomach, uterine endometrium and cervical cancers with higher levels in tumors than in adjacent non-tumor tissue (at protein level). {
• Sequence:

  MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
  YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
  FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
  IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
  NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
  PDLSLLPNVTGGLAPLPSAGDLFSTD

• Sequence length: 326

Pathways

Reactome Pathway:

RNA polymerase II transcribes snRNA genes

Related Genes

No strongly related genes found yet for RPRD1B.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to RPRD1B.