RBM42 (RNA binding motif protein 42)

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Gene miRNA Gene ontology Other IDs Protein Related genes Diseases linked via similar genes

Gene

• Entrez ID: 79171
• Gene name: RNA binding motif protein 42
• Gene symbol: RBM42
• Synonyms (NCBI Gene): -
• Chromosome: 19
• Chromosome location: 19q13.12

miRNA Show/Hide all (17)

miRTarBase ID	miRNA	Experiments	Reference
MIRT020582	hsa-miR-155-5p	Proteomics	18668040
MIRT023566	hsa-miR-1-3p	Proteomics	18668040
MIRT042113	hsa-miR-484	CLASH	23622248
MIRT036026	hsa-miR-1301-3p	CLASH	23622248
MIRT1296219	hsa-miR-1207-5p	CLIP-seq
MIRT1296220	hsa-miR-1909	CLIP-seq
MIRT1296221	hsa-miR-4260	CLIP-seq
MIRT1296222	hsa-miR-4763-3p	CLIP-seq
MIRT1296223	hsa-miR-486-3p	CLIP-seq
MIRT1296224	hsa-miR-582-3p	CLIP-seq
MIRT2312917	hsa-miR-1207-3p	CLIP-seq
MIRT2312918	hsa-miR-1293	CLIP-seq
MIRT2312919	hsa-miR-3138	CLIP-seq
MIRT2312920	hsa-miR-4483	CLIP-seq
MIRT2312921	hsa-miR-4520a-3p	CLIP-seq
MIRT2312922	hsa-miR-4731-5p	CLIP-seq
MIRT2312923	hsa-miR-637	CLIP-seq

Gene ontology (GO) Show/Hide all (14)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000398	Process	MRNA splicing, via spliceosome	NAS	30975767
GO:0003676	Function	Nucleic acid binding	IEA
GO:0003723	Function	RNA binding	HDA	22658674
GO:0003723	Function	RNA binding	IEA
GO:0003729	Function	MRNA binding	IBA
GO:0003729	Function	MRNA binding	IEA
GO:0005515	Function	Protein binding	IPI	16189514, 22365833, 25416956, 29892012, 32296183, 35271311
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	NAS	30975767
GO:0005654	Component	Nucleoplasm	TAS
GO:0005681	Component	Spliceosomal complex	IPI	30975767
GO:0005737	Component	Cytoplasm	IEA
GO:0046540	Component	U4/U6 x U5 tri-snRNP complex	IPI	30975767
GO:0048025	Process	Negative regulation of mRNA splicing, via spliceosome	IEA

Other IDs

• MIM: 613232
• HGNC: 28117
• e!Ensembl: ENSG00000126254

Protein

• UniProt ID: Q9BTD8
• Protein name: RNA-binding protein 42 (RNA-binding motif protein 42)
• Protein function: Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.
• PDB: 6QW6 , 6QX9 , 8H6E , 8H6J , 8QP8 , 8QP9 , 8QPK , 8QXD , 8R08 , 8R0A
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00076	RRM_1	383 → 453	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain

• Sequence:

  MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
  PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
  GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
  RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
  LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
  PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
  RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
  TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
  

• Sequence length: 480

Related Genes

No strongly related genes found yet for RBM42.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to RBM42.