PRPF39 (pre-mRNA processing factor 39)

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Gene miRNA Gene ontology Other IDs Protein Related genes Diseases linked via similar genes

Gene

• Entrez ID: 55015
• Gene name: Pre-mRNA processing factor 39
• Gene symbol: PRPF39
• Synonyms (NCBI Gene): -
• Chromosome: 14
• Chromosome location: 14q21.2

miRNA Show/Hide all (129)

miRTarBase ID	miRNA	Experiments	Reference
MIRT031015	hsa-miR-21-5p	Sequencing	20371350
MIRT1265535	hsa-miR-3646	CLIP-seq
MIRT1265536	hsa-miR-3662	CLIP-seq
MIRT1265537	hsa-miR-4328	CLIP-seq
MIRT1265538	hsa-miR-4457	CLIP-seq
MIRT1265539	hsa-miR-4666-5p	CLIP-seq
MIRT1265540	hsa-miR-4699-5p	CLIP-seq
MIRT1265541	hsa-miR-513b	CLIP-seq
MIRT1265542	hsa-miR-520d-5p	CLIP-seq
MIRT1265543	hsa-miR-524-5p	CLIP-seq
MIRT1265544	hsa-miR-548n	CLIP-seq
MIRT1265545	hsa-miR-548t	CLIP-seq
MIRT2078040	hsa-miR-1255a	CLIP-seq
MIRT2078041	hsa-miR-1255b	CLIP-seq
MIRT2078042	hsa-miR-1468	CLIP-seq
MIRT1265538	hsa-miR-4457	CLIP-seq
MIRT1265541	hsa-miR-513b	CLIP-seq
MIRT1265542	hsa-miR-520d-5p	CLIP-seq
MIRT1265543	hsa-miR-524-5p	CLIP-seq
MIRT2078043	hsa-miR-556-3p	CLIP-seq
MIRT2078044	hsa-miR-627	CLIP-seq
MIRT2078045	hsa-miR-924	CLIP-seq
MIRT2304546	hsa-miR-1184	CLIP-seq
MIRT2304547	hsa-miR-1205	CLIP-seq
MIRT2304548	hsa-miR-3158-5p	CLIP-seq
MIRT2304549	hsa-miR-362-5p	CLIP-seq
MIRT2304550	hsa-miR-3713	CLIP-seq
MIRT2304551	hsa-miR-500b	CLIP-seq
MIRT2304552	hsa-miR-501-5p	CLIP-seq
MIRT2304553	hsa-miR-544	CLIP-seq
MIRT2601545	hsa-miR-105	CLIP-seq
MIRT2304546	hsa-miR-1184	CLIP-seq
MIRT2304547	hsa-miR-1205	CLIP-seq
MIRT2601546	hsa-miR-1267	CLIP-seq
MIRT2601547	hsa-miR-1283	CLIP-seq
MIRT2601548	hsa-miR-1305	CLIP-seq
MIRT2601549	hsa-miR-154	CLIP-seq
MIRT2601550	hsa-miR-155	CLIP-seq
MIRT2601551	hsa-miR-186	CLIP-seq
MIRT2601552	hsa-miR-190	CLIP-seq
MIRT2601553	hsa-miR-190b	CLIP-seq
MIRT2601554	hsa-miR-21	CLIP-seq
MIRT2304548	hsa-miR-3158-5p	CLIP-seq
MIRT2601555	hsa-miR-33a	CLIP-seq
MIRT2601556	hsa-miR-33b	CLIP-seq
MIRT2601557	hsa-miR-3613-3p	CLIP-seq
MIRT2304549	hsa-miR-362-5p	CLIP-seq
MIRT2601558	hsa-miR-3671	CLIP-seq
MIRT2601559	hsa-miR-3685	CLIP-seq
MIRT2304550	hsa-miR-3713	CLIP-seq
MIRT2601560	hsa-miR-374a	CLIP-seq
MIRT2601561	hsa-miR-374b	CLIP-seq
MIRT2601562	hsa-miR-3973	CLIP-seq
MIRT2601563	hsa-miR-4305	CLIP-seq
MIRT2601564	hsa-miR-452	CLIP-seq
MIRT2601565	hsa-miR-4652-3p	CLIP-seq
MIRT2601566	hsa-miR-4659a-3p	CLIP-seq
MIRT2601567	hsa-miR-4659b-3p	CLIP-seq
MIRT2601568	hsa-miR-4676-3p	CLIP-seq
MIRT2601569	hsa-miR-4684-3p	CLIP-seq
MIRT2601570	hsa-miR-4729	CLIP-seq
MIRT2601571	hsa-miR-4777-5p	CLIP-seq
MIRT2601572	hsa-miR-4778-5p	CLIP-seq
MIRT2601573	hsa-miR-494	CLIP-seq
MIRT2304551	hsa-miR-500b	CLIP-seq
MIRT2304552	hsa-miR-501-5p	CLIP-seq
MIRT2601574	hsa-miR-518a-5p	CLIP-seq
MIRT2601575	hsa-miR-518d-5p	CLIP-seq
MIRT2601576	hsa-miR-519b-5p	CLIP-seq
MIRT2601577	hsa-miR-519c-5p	CLIP-seq
MIRT2601578	hsa-miR-520c-5p	CLIP-seq
MIRT2601579	hsa-miR-526a	CLIP-seq
MIRT2601580	hsa-miR-527	CLIP-seq
MIRT2601581	hsa-miR-543	CLIP-seq
MIRT2304553	hsa-miR-544	CLIP-seq
MIRT2601582	hsa-miR-545	CLIP-seq
MIRT2601583	hsa-miR-548c-3p	CLIP-seq
MIRT2601584	hsa-miR-548l	CLIP-seq
MIRT1265544	hsa-miR-548n	CLIP-seq
MIRT1265545	hsa-miR-548t	CLIP-seq
MIRT2601585	hsa-miR-579	CLIP-seq
MIRT2601586	hsa-miR-586	CLIP-seq
MIRT2601587	hsa-miR-590-5p	CLIP-seq
MIRT2601588	hsa-miR-7	CLIP-seq
MIRT2601545	hsa-miR-105	CLIP-seq
MIRT2601546	hsa-miR-1267	CLIP-seq
MIRT2601547	hsa-miR-1283	CLIP-seq
MIRT2601549	hsa-miR-154	CLIP-seq
MIRT2601550	hsa-miR-155	CLIP-seq
MIRT2601551	hsa-miR-186	CLIP-seq
MIRT2601552	hsa-miR-190	CLIP-seq
MIRT2601553	hsa-miR-190b	CLIP-seq
MIRT2601554	hsa-miR-21	CLIP-seq
MIRT2601555	hsa-miR-33a	CLIP-seq
MIRT2601556	hsa-miR-33b	CLIP-seq
MIRT2601557	hsa-miR-3613-3p	CLIP-seq
MIRT2601558	hsa-miR-3671	CLIP-seq
MIRT2601559	hsa-miR-3685	CLIP-seq
MIRT2601560	hsa-miR-374a	CLIP-seq
MIRT2601561	hsa-miR-374b	CLIP-seq
MIRT2601562	hsa-miR-3973	CLIP-seq
MIRT2601563	hsa-miR-4305	CLIP-seq
MIRT2601564	hsa-miR-452	CLIP-seq
MIRT2601565	hsa-miR-4652-3p	CLIP-seq
MIRT2601566	hsa-miR-4659a-3p	CLIP-seq
MIRT2601567	hsa-miR-4659b-3p	CLIP-seq
MIRT2601568	hsa-miR-4676-3p	CLIP-seq
MIRT2601569	hsa-miR-4684-3p	CLIP-seq
MIRT2601570	hsa-miR-4729	CLIP-seq
MIRT2601571	hsa-miR-4777-5p	CLIP-seq
MIRT2601572	hsa-miR-4778-5p	CLIP-seq
MIRT2601573	hsa-miR-494	CLIP-seq
MIRT2601574	hsa-miR-518a-5p	CLIP-seq
MIRT2601575	hsa-miR-518d-5p	CLIP-seq
MIRT2601576	hsa-miR-519b-5p	CLIP-seq
MIRT2601577	hsa-miR-519c-5p	CLIP-seq
MIRT2601578	hsa-miR-520c-5p	CLIP-seq
MIRT2601579	hsa-miR-526a	CLIP-seq
MIRT2601580	hsa-miR-527	CLIP-seq
MIRT2601581	hsa-miR-543	CLIP-seq
MIRT2601582	hsa-miR-545	CLIP-seq
MIRT2601583	hsa-miR-548c-3p	CLIP-seq
MIRT2601584	hsa-miR-548l	CLIP-seq
MIRT1265544	hsa-miR-548n	CLIP-seq
MIRT1265545	hsa-miR-548t	CLIP-seq
MIRT2601585	hsa-miR-579	CLIP-seq
MIRT2601586	hsa-miR-586	CLIP-seq
MIRT2601587	hsa-miR-590-5p	CLIP-seq
MIRT2601588	hsa-miR-7	CLIP-seq

Gene ontology (GO) Show/Hide all (10)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000243	Component	Commitment complex	IBA
GO:0000395	Process	MRNA 5'-splice site recognition	IBA
GO:0005515	Function	Protein binding	IPI	32296183, 32814053
GO:0005634	Component	Nucleus	IEA
GO:0005685	Component	U1 snRNP	IBA
GO:0006396	Process	RNA processing	IEA
GO:0006397	Process	MRNA processing	IEA
GO:0008380	Process	RNA splicing	IEA
GO:0030627	Function	Pre-mRNA 5'-splice site binding	IBA
GO:0071004	Component	U2-type prespliceosome	IBA

Other IDs

• MIM: 614907
• HGNC: 20314
• e!Ensembl: ENSG00000185246

Protein

• UniProt ID: Q86UA1
• Protein name: Pre-mRNA-processing factor 39 (PRP39 homolog)
• Protein function: Involved in pre-mRNA splicing.
• Sequence:

  MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEM
  ASAVDLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDR
  FFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPG
  DPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLY
  SHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPA
  KLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYL
  EFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKK
  PMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQD
  AIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG
  DLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKE
  QDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPWNY
  GQYYPPPPT

• Sequence length: 669

Related Genes

No strongly related genes found yet for PRPF39.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to PRPF39.