Gene Gene information from NCBI Gene database.
Entrez ID 5162
Gene name Pyruvate dehydrogenase E1 subunit beta
Gene symbol PDHB
Synonyms (NCBI Gene)
E1betaPDHBDPDHE1-BPDHE1BPHE1B
Chromosome 3
Chromosome location 3p14.3
Summary The pyruvate dehydrogenase (PDH) complex is a nuclear-encoded mitochondrial multienzyme complex that catalyzes the overall conversion of pyruvate to acetyl-CoA and carbon dioxide, and provides the primary link between glycolysis and the tricarboxylic acid
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs28933391 G>A Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs28935769 T>C Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs863224158 A>T Likely-pathogenic Missense variant, intron variant, non coding transcript variant, coding sequence variant
rs863225125 TACATACCATA>- Pathogenic Splice donor variant, intron variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
155
miRTarBase ID miRNA Experiments Reference
MIRT027487 hsa-miR-98-5p Microarray 19088304
MIRT052771 hsa-miR-1260b CLASH 23622248
MIRT687273 hsa-miR-106a-5p HITS-CLIP 23313552
MIRT687272 hsa-miR-106b-5p HITS-CLIP 23313552
MIRT687271 hsa-miR-17-5p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
29
GO ID Ontology Definition Evidence Reference
GO:0004739 Function Pyruvate dehydrogenase (acetyl-transferring) activity IDA 18164639, 19081061
GO:0004739 Function Pyruvate dehydrogenase (acetyl-transferring) activity IEA
GO:0004739 Function Pyruvate dehydrogenase (acetyl-transferring) activity TAS 2376596
GO:0005515 Function Protein binding IPI 12651851, 18206651, 19081061, 29128334, 33961781
GO:0005634 Component Nucleus HDA 21630459
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
179060 8808 ENSG00000168291
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P11177
Protein name Pyruvate dehydrogenase E1 component subunit beta, mitochondrial (PDHE1-B) (EC 1.2.4.1)
Protein function The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and thereby links the glycolytic pathway to the tricarboxylic cycle.
PDB 1NI4 , 2OZL , 3EXE , 3EXF , 3EXG , 3EXH , 3EXI , 6CER , 6CFO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02779 Transket_pyr 32 209 Transketolase, pyrimidine binding domain Domain
PF02780 Transketolase_C 226 349 Transketolase, C-terminal domain Domain
Sequence
Sequence length 359
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Likely pathogenic rs201199166 RCV005909244
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Clear cell carcinoma of kidney Likely pathogenic rs1019990431 RCV005927719
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial cancer of breast Likely pathogenic rs201199166 RCV005909243
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Lung cancer Likely pathogenic rs201199166 RCV005909246
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARCINOMA, RENAL CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Uncertain significance; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
IRRITABLE BOWEL SYNDROME GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LEIGH SYNDROME ClinGen, GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acidosis Lactic Lactic acidosis Pubtator 40050878 Associate
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 39396083 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 37547319 Associate
★☆☆☆☆
Found in Text Mining only
Ataxia with Lactic Acidosis, Type I ATAXIA WITH LACTIC ACIDOSIS CTD_human_DG 15138885
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 29940887
★☆☆☆☆
Found in Text Mining only
Carcinoma Pancreatic Ductal Pancreatic ductal carcinoma Pubtator 36826087 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 37350959, 37641032 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 27711126 Associate
★☆☆☆☆
Found in Text Mining only
Chromophobe Renal Cell Carcinoma Chromophobe Carcinoma CTD_human_DG 25401301
★☆☆☆☆
Found in Text Mining only
Coenzyme Q10 Deficiency Coenzyme q10 deficiency Pubtator 26014431 Associate
★☆☆☆☆
Found in Text Mining only