PCDHB13 (protocadherin beta 13)

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Gene miRNA Gene ontology Other IDs Protein Related genes Diseases linked via similar genes

Gene

• Entrez ID: 56123
• Gene name: Protocadherin beta 13
• Gene symbol: PCDHB13
• Synonyms (NCBI Gene): PCDH-BETA13
• Chromosome: 5
• Chromosome location: 5q31.3
• Summary: This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters.

miRNA Show/Hide all (71)

miRTarBase ID	miRNA	Experiments	Reference
MIRT1217081	hsa-miR-105	CLIP-seq
MIRT1217082	hsa-miR-1262	CLIP-seq
MIRT1217083	hsa-miR-1287	CLIP-seq
MIRT1217084	hsa-miR-1321	CLIP-seq
MIRT1217085	hsa-miR-186	CLIP-seq
MIRT1217086	hsa-miR-208a	CLIP-seq
MIRT1217087	hsa-miR-208b	CLIP-seq
MIRT1217088	hsa-miR-219-2-3p	CLIP-seq
MIRT1217089	hsa-miR-2909	CLIP-seq
MIRT1217090	hsa-miR-2964a-3p	CLIP-seq
MIRT1217091	hsa-miR-302f	CLIP-seq
MIRT1217092	hsa-miR-3123	CLIP-seq
MIRT1217093	hsa-miR-3135b	CLIP-seq
MIRT1217094	hsa-miR-3148	CLIP-seq
MIRT1217095	hsa-miR-3162-5p	CLIP-seq
MIRT1217096	hsa-miR-3185	CLIP-seq
MIRT1217097	hsa-miR-34b	CLIP-seq
MIRT1217098	hsa-miR-3612	CLIP-seq
MIRT1217099	hsa-miR-3646	CLIP-seq
MIRT1217100	hsa-miR-3647-3p	CLIP-seq
MIRT1217101	hsa-miR-3653	CLIP-seq
MIRT1217102	hsa-miR-3658	CLIP-seq
MIRT1217103	hsa-miR-3673	CLIP-seq
MIRT1217104	hsa-miR-4311	CLIP-seq
MIRT1217105	hsa-miR-4432	CLIP-seq
MIRT1217106	hsa-miR-4528	CLIP-seq
MIRT1217107	hsa-miR-4670-3p	CLIP-seq
MIRT1217108	hsa-miR-4701-3p	CLIP-seq
MIRT1217109	hsa-miR-4727-3p	CLIP-seq
MIRT1217110	hsa-miR-4739	CLIP-seq
MIRT1217111	hsa-miR-4756-5p	CLIP-seq
MIRT1217112	hsa-miR-4775	CLIP-seq
MIRT1217113	hsa-miR-499-5p	CLIP-seq
MIRT1217114	hsa-miR-590-3p	CLIP-seq
MIRT1217115	hsa-miR-633	CLIP-seq
MIRT1217116	hsa-miR-650	CLIP-seq
MIRT1217117	hsa-miR-875-3p	CLIP-seq
MIRT2062644	hsa-miR-141	CLIP-seq
MIRT2062645	hsa-miR-190	CLIP-seq
MIRT2062646	hsa-miR-190b	CLIP-seq
MIRT2062647	hsa-miR-200a	CLIP-seq
MIRT1217086	hsa-miR-208a	CLIP-seq
MIRT1217087	hsa-miR-208b	CLIP-seq
MIRT2062648	hsa-miR-25	CLIP-seq
MIRT2062649	hsa-miR-299-5p	CLIP-seq
MIRT2062650	hsa-miR-3133	CLIP-seq
MIRT2062651	hsa-miR-3145-5p	CLIP-seq
MIRT2062652	hsa-miR-3146	CLIP-seq
MIRT2062653	hsa-miR-32	CLIP-seq
MIRT2062654	hsa-miR-363	CLIP-seq
MIRT1217102	hsa-miR-3658	CLIP-seq
MIRT2062655	hsa-miR-367	CLIP-seq
MIRT2062656	hsa-miR-3941	CLIP-seq
MIRT2062657	hsa-miR-4282	CLIP-seq
MIRT2062658	hsa-miR-4427	CLIP-seq
MIRT1217105	hsa-miR-4432	CLIP-seq
MIRT2062659	hsa-miR-4464	CLIP-seq
MIRT1217106	hsa-miR-4528	CLIP-seq
MIRT2062660	hsa-miR-4643	CLIP-seq
MIRT2062661	hsa-miR-466	CLIP-seq
MIRT2062662	hsa-miR-4672	CLIP-seq
MIRT2062663	hsa-miR-4680-3p	CLIP-seq
MIRT2062664	hsa-miR-4748	CLIP-seq
MIRT2062665	hsa-miR-4789-3p	CLIP-seq
MIRT2062666	hsa-miR-487a	CLIP-seq
MIRT2062667	hsa-miR-491-3p	CLIP-seq
MIRT1217113	hsa-miR-499-5p	CLIP-seq
MIRT2062668	hsa-miR-654-3p	CLIP-seq
MIRT2062669	hsa-miR-92a	CLIP-seq
MIRT2062670	hsa-miR-92b	CLIP-seq
MIRT2062671	hsa-miR-944	CLIP-seq

Gene ontology (GO) Show/Hide all (17)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005509	Function	Calcium ion binding	IEA
GO:0005886	Component	Plasma membrane	IBA
GO:0005886	Component	Plasma membrane	IEA
GO:0007155	Process	Cell adhesion	IBA
GO:0007155	Process	Cell adhesion	IEA
GO:0007156	Process	Homophilic cell adhesion via plasma membrane adhesion molecules	IEA
GO:0007268	Process	Chemical synaptic transmission	TAS	12231349
GO:0007399	Process	Nervous system development	IEA
GO:0007416	Process	Synapse assembly	TAS	12231349
GO:0016020	Component	Membrane	IEA
GO:0016020	Component	Membrane	NAS	11322959
GO:0016339	Process	Calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	NAS	11322959
GO:0032391	Component	Photoreceptor connecting cilium	IEA
GO:0045202	Component	Synapse	IEA
GO:0045211	Component	Postsynaptic membrane	IEA
GO:0050839	Function	Cell adhesion molecule binding	IBA
GO:0097381	Component	Photoreceptor disc membrane	IEA

Other IDs

• MIM: 606339
• HGNC: 8684
• e!Ensembl: ENSG00000187372

Protein

• UniProt ID: Q9Y5F0
• Protein name: Protocadherin beta-13 (PCDH-beta-13)
• Protein function: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00028	Cadherin	248 → 339	Cadherin domain	Domain
  PF00028	Cadherin	456 → 552	Cadherin domain	Domain
  PF00028	Cadherin	353 → 442	Cadherin domain	Domain
  PF00028	Cadherin	139 → 234	Cadherin domain	Domain
  PF00028	Cadherin	575 → 663	Cadherin domain	Domain
  PF08266	Cadherin_2	31 → 113	Cadherin-like	Domain
  PF16492	Cadherin_C_2	685 → 768	Cadherin cytoplasmic C-terminal	Family

• Sequence:

  MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF
  SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA
  ELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFR
  VLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNA
  PEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTG
  EIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN
  APETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSAENFYTLLTERPLDRESRAEYNIT
  ITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRDS
  GTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSPA
  LSSEALVRVVVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
  WLSYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
  LLVDGFSQPYLPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
  SVGRCLVPEGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCPG
  KEIQGNSTFPNNFGFNIQ

• Sequence length: 798

Related Genes

No strongly related genes found yet for PCDHB13.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to PCDHB13.