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Gene Gene information from NCBI Gene database.
Entrez ID 57575
Gene name Protocadherin 10
Gene symbol PCDH10
Synonyms (NCBI Gene)
OL-PCDHPCDH19
Chromosome 4
Chromosome location 4q28.3
Summary This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. This family member contains 6 extracellular cadherin domains, a transmembrane domain and a cytoplasmic tail differing from those of the classical cadherins. The e
miRNA miRNA information provided by mirtarbase database.
216 Show/Hide all (216)
miRTarBase ID miRNA Experiments Reference
MIRT045051 hsa-miR-186-5p CLASH 23622248
MIRT519003 hsa-miR-223-5p HITS-CLIP 21572407
MIRT519002 hsa-miR-6867-5p HITS-CLIP 21572407
MIRT519001 hsa-miR-190a-3p HITS-CLIP 21572407
MIRT552018 hsa-miR-3924 HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
13 Show/Hide all (13)
GO ID Ontology Definition Evidence Reference
GO:0005509 Function Calcium ion binding IEA
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
GO:0007155 Process Cell adhesion IBA
GO:0007155 Process Cell adhesion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608286 13404 ENSG00000138650
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9P2E7
Protein name Protocadherin-10
Protein function Potential calcium-dependent cell-adhesion protein.; (Microbial infection) Acts as a receptor for Western equine encephalitis virus.
PDB 6VFQ , 6VFW , 6VG4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 255 → 349 Cadherin domain Domain
PF00028 Cadherin 589 → 679 Cadherin domain Domain
PF00028 Cadherin 364 → 454 Cadherin domain Domain
PF00028 Cadherin 468 → 565 Cadherin domain Domain
PF00028 Cadherin 127 → 241 Cadherin domain Domain
PF08266 Cadherin_2 19 → 101 Cadherin-like Domain
PF16492 Cadherin_C_2 713 → 838 Cadherin cytoplasmic C-terminal Family
Tissue specificity TISSUE SPECIFICITY: Moderately expressed in all regions of the brain examined, as well as in testis and ovary, and low expression in all other tissues tested. {ECO:0000269|PubMed:11549318}.
Sequence
Sequence length 1040
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
5
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Reference Evidence Score
AUTISTIC DISORDER — CTD, Disgenet
CTD, Disgenet
18621663
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HYPERTENSIVE NEPHROPATHY — GWAS catalog 34067580
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INSOMNIA — GWAS catalog 34343768
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SCOLIOSIS — GWAS catalog 30019117
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
TREATMENT-RESISTANT HYPERTENSION — GWAS catalog 31545351
★★★★★
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Show/Hide Text Mining Associations (185)
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 21960365
★★★★★
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 21960365
★★★★★
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 29202805
★★★★★
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 21597995
★★★★★
★☆☆☆☆
Found in Text Mining only
Androgen-Insensitivity Syndrome Androgen-Insensitivity Syndrome BEFREE 31651684
★★★★★
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 31088413
★★★★★
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Aphasia Aphasia Pubtator 31205075 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only
Atypical absence seizure Absence Seizure HPO_DG
★★★★★
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 29377098, 32366910, 32722525, 36980870 Associate
★★★★★
★☆☆☆☆
Found in Text Mining only