NIP7 (nucleolar pre-rRNA processing protein NIP7)

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Gene miRNA Gene ontology Other IDs Protein Pathways Related genes Diseases linked via similar genes

Gene

• Entrez ID: 51388
• Gene name: Nucleolar pre-rRNA processing protein NIP7
• Gene symbol: NIP7
• Synonyms (NCBI Gene): CGI-37, HSPC031, KD93
• Chromosome: 16
• Chromosome location: 16q22.1

miRNA Show/Hide all (286)

miRTarBase ID	miRNA	Experiments	Reference
MIRT023066	hsa-miR-124-3p	Proteomics;Microarray	18668037
MIRT028652	hsa-miR-30a-5p	Proteomics	18668040
MIRT030007	hsa-miR-26b-5p	Sequencing	20371350
MIRT048591	hsa-miR-100-5p	CLASH	23622248
MIRT040453	hsa-miR-615-3p	CLASH	23622248
MIRT696318	hsa-miR-3150a-5p	HITS-CLIP	23313552
MIRT696317	hsa-miR-3150b-5p	HITS-CLIP	23313552
MIRT696316	hsa-miR-371b-5p	HITS-CLIP	23313552
MIRT696315	hsa-miR-373-5p	HITS-CLIP	23313552
MIRT696314	hsa-miR-616-5p	HITS-CLIP	23313552
MIRT696313	hsa-miR-371a-5p	HITS-CLIP	23313552
MIRT696312	hsa-miR-372-5p	HITS-CLIP	23313552
MIRT696310	hsa-miR-3663-5p	HITS-CLIP	23313552
MIRT696311	hsa-miR-4755-3p	HITS-CLIP	23313552
MIRT696309	hsa-miR-6131	HITS-CLIP	23313552
MIRT195549	hsa-miR-548s	HITS-CLIP	23313552
MIRT696308	hsa-miR-4701-5p	HITS-CLIP	23313552
MIRT696307	hsa-miR-588	HITS-CLIP	23313552
MIRT696306	hsa-miR-4435	HITS-CLIP	23313552
MIRT696305	hsa-miR-3187-3p	HITS-CLIP	23313552
MIRT696304	hsa-miR-6843-3p	HITS-CLIP	23313552
MIRT696303	hsa-miR-6848-3p	HITS-CLIP	23313552
MIRT630073	hsa-miR-5197-5p	HITS-CLIP	23824327
MIRT630072	hsa-miR-130a-3p	HITS-CLIP	23824327
MIRT630071	hsa-miR-130b-3p	HITS-CLIP	23824327
MIRT630070	hsa-miR-301a-3p	HITS-CLIP	23824327
MIRT630069	hsa-miR-301b-3p	HITS-CLIP	23824327
MIRT630068	hsa-miR-3666	HITS-CLIP	23824327
MIRT630067	hsa-miR-4295	HITS-CLIP	23824327
MIRT630066	hsa-miR-454-3p	HITS-CLIP	23824327
MIRT630065	hsa-miR-183-5p	HITS-CLIP	23824327
MIRT630064	hsa-miR-767-5p	HITS-CLIP	23824327
MIRT630063	hsa-miR-3135b	HITS-CLIP	23824327
MIRT630062	hsa-miR-504-3p	HITS-CLIP	23824327
MIRT630061	hsa-miR-122-5p	HITS-CLIP	23824327
MIRT630060	hsa-miR-593-5p	HITS-CLIP	23824327
MIRT630059	hsa-miR-3652	HITS-CLIP	23824327
MIRT630058	hsa-miR-4430	HITS-CLIP	23824327
MIRT630057	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT630056	hsa-miR-8057	HITS-CLIP	23824327
MIRT030007	hsa-miR-26b-5p	PAR-CLIP	26701625
MIRT696318	hsa-miR-3150a-5p	HITS-CLIP	27418678
MIRT696317	hsa-miR-3150b-5p	HITS-CLIP	27418678
MIRT696305	hsa-miR-3187-3p	HITS-CLIP	27418678
MIRT696310	hsa-miR-3663-5p	HITS-CLIP	27418678
MIRT696313	hsa-miR-371a-5p	HITS-CLIP	27418678
MIRT696316	hsa-miR-371b-5p	HITS-CLIP	27418678
MIRT696312	hsa-miR-372-5p	HITS-CLIP	27418678
MIRT696315	hsa-miR-373-5p	HITS-CLIP	27418678
MIRT696306	hsa-miR-4435	HITS-CLIP	27418678
MIRT696308	hsa-miR-4701-5p	HITS-CLIP	27418678
MIRT696311	hsa-miR-4755-3p	HITS-CLIP	27418678
MIRT195549	hsa-miR-548s	HITS-CLIP	27418678
MIRT696307	hsa-miR-588	HITS-CLIP	27418678
MIRT696309	hsa-miR-6131	HITS-CLIP	27418678
MIRT696314	hsa-miR-616-5p	HITS-CLIP	27418678
MIRT696304	hsa-miR-6843-3p	HITS-CLIP	27418678
MIRT696303	hsa-miR-6848-3p	HITS-CLIP	27418678
MIRT696318	hsa-miR-3150a-5p	HITS-CLIP	23313552
MIRT696317	hsa-miR-3150b-5p	HITS-CLIP	23313552
MIRT696316	hsa-miR-371b-5p	HITS-CLIP	23313552
MIRT696315	hsa-miR-373-5p	HITS-CLIP	23313552
MIRT696314	hsa-miR-616-5p	HITS-CLIP	23313552
MIRT696313	hsa-miR-371a-5p	HITS-CLIP	23313552
MIRT696312	hsa-miR-372-5p	HITS-CLIP	23313552
MIRT696310	hsa-miR-3663-5p	HITS-CLIP	23313552
MIRT696311	hsa-miR-4755-3p	HITS-CLIP	23313552
MIRT696309	hsa-miR-6131	HITS-CLIP	23313552
MIRT195549	hsa-miR-548s	HITS-CLIP	23313552
MIRT696308	hsa-miR-4701-5p	HITS-CLIP	23313552
MIRT696307	hsa-miR-588	HITS-CLIP	23313552
MIRT696306	hsa-miR-4435	HITS-CLIP	23313552
MIRT696305	hsa-miR-3187-3p	HITS-CLIP	23313552
MIRT696304	hsa-miR-6843-3p	HITS-CLIP	23313552
MIRT696303	hsa-miR-6848-3p	HITS-CLIP	23313552
MIRT630073	hsa-miR-5197-5p	HITS-CLIP	23824327
MIRT630072	hsa-miR-130a-3p	HITS-CLIP	23824327
MIRT630071	hsa-miR-130b-3p	HITS-CLIP	23824327
MIRT630070	hsa-miR-301a-3p	HITS-CLIP	23824327
MIRT630069	hsa-miR-301b-3p	HITS-CLIP	23824327
MIRT630068	hsa-miR-3666	HITS-CLIP	23824327
MIRT630067	hsa-miR-4295	HITS-CLIP	23824327
MIRT630066	hsa-miR-454-3p	HITS-CLIP	23824327
MIRT630065	hsa-miR-183-5p	HITS-CLIP	23824327
MIRT630064	hsa-miR-767-5p	HITS-CLIP	23824327
MIRT630063	hsa-miR-3135b	HITS-CLIP	23824327
MIRT630062	hsa-miR-504-3p	HITS-CLIP	23824327
MIRT630061	hsa-miR-122-5p	HITS-CLIP	23824327
MIRT630060	hsa-miR-593-5p	HITS-CLIP	23824327
MIRT630059	hsa-miR-3652	HITS-CLIP	23824327
MIRT630058	hsa-miR-4430	HITS-CLIP	23824327
MIRT630057	hsa-miR-106a-3p	HITS-CLIP	23824327
MIRT630056	hsa-miR-8057	HITS-CLIP	23824327
MIRT1185209	hsa-miR-150	CLIP-seq
MIRT1185210	hsa-miR-1976	CLIP-seq
MIRT1185211	hsa-miR-4261	CLIP-seq
MIRT1185212	hsa-miR-4279	CLIP-seq
MIRT1185213	hsa-miR-4496	CLIP-seq
MIRT1185214	hsa-miR-4722-3p	CLIP-seq
MIRT1185215	hsa-miR-498	CLIP-seq
MIRT1185216	hsa-miR-101	CLIP-seq
MIRT1185217	hsa-miR-1204	CLIP-seq
MIRT1185218	hsa-miR-1245	CLIP-seq
MIRT1185219	hsa-miR-125a-5p	CLIP-seq
MIRT1185220	hsa-miR-125b	CLIP-seq
MIRT1185221	hsa-miR-1273f	CLIP-seq
MIRT1185222	hsa-miR-144	CLIP-seq
MIRT1185223	hsa-miR-148a	CLIP-seq
MIRT1185224	hsa-miR-148b	CLIP-seq
MIRT1185225	hsa-miR-152	CLIP-seq
MIRT1185226	hsa-miR-197	CLIP-seq
MIRT1185227	hsa-miR-200b	CLIP-seq
MIRT1185228	hsa-miR-200c	CLIP-seq
MIRT1185229	hsa-miR-2114	CLIP-seq
MIRT1185230	hsa-miR-223	CLIP-seq
MIRT1185231	hsa-miR-26a	CLIP-seq
MIRT1185232	hsa-miR-26b	CLIP-seq
MIRT1185233	hsa-miR-3140-3p	CLIP-seq
MIRT1185234	hsa-miR-3156-5p	CLIP-seq
MIRT1185235	hsa-miR-3170	CLIP-seq
MIRT1185236	hsa-miR-3180-5p	CLIP-seq
MIRT1185237	hsa-miR-3199	CLIP-seq
MIRT1185238	hsa-miR-320a	CLIP-seq
MIRT1185239	hsa-miR-320b	CLIP-seq
MIRT1185240	hsa-miR-320c	CLIP-seq
MIRT1185241	hsa-miR-320d	CLIP-seq
MIRT1185242	hsa-miR-3612	CLIP-seq
MIRT1185243	hsa-miR-3622a-5p	CLIP-seq
MIRT1185244	hsa-miR-3646	CLIP-seq
MIRT1185245	hsa-miR-3653	CLIP-seq
MIRT1185246	hsa-miR-3659	CLIP-seq
MIRT1185247	hsa-miR-3662	CLIP-seq
MIRT1185248	hsa-miR-369-3p	CLIP-seq
MIRT1185249	hsa-miR-371-5p	CLIP-seq
MIRT1185250	hsa-miR-374a	CLIP-seq
MIRT1185251	hsa-miR-374b	CLIP-seq
MIRT1185252	hsa-miR-376a	CLIP-seq
MIRT1185253	hsa-miR-376b	CLIP-seq
MIRT1185254	hsa-miR-383	CLIP-seq
MIRT1185255	hsa-miR-3976	CLIP-seq
MIRT1185256	hsa-miR-410	CLIP-seq
MIRT1185257	hsa-miR-411	CLIP-seq
MIRT1185258	hsa-miR-412	CLIP-seq
MIRT1185259	hsa-miR-4251	CLIP-seq
MIRT1185260	hsa-miR-4252	CLIP-seq
MIRT1185261	hsa-miR-4263	CLIP-seq
MIRT1185262	hsa-miR-4271	CLIP-seq
MIRT1185263	hsa-miR-4276	CLIP-seq
MIRT1185264	hsa-miR-429	CLIP-seq
MIRT1185265	hsa-miR-4319	CLIP-seq
MIRT1185266	hsa-miR-433	CLIP-seq
MIRT1185267	hsa-miR-4429	CLIP-seq
MIRT1185268	hsa-miR-4438	CLIP-seq
MIRT1185269	hsa-miR-4440	CLIP-seq
MIRT1185270	hsa-miR-4475	CLIP-seq
MIRT1185271	hsa-miR-4477a	CLIP-seq
MIRT1185272	hsa-miR-4533	CLIP-seq
MIRT1185273	hsa-miR-4540	CLIP-seq
MIRT1185274	hsa-miR-4634	CLIP-seq
MIRT1185275	hsa-miR-4680-3p	CLIP-seq
MIRT1185276	hsa-miR-4697-3p	CLIP-seq
MIRT1185277	hsa-miR-4709-3p	CLIP-seq
MIRT1185278	hsa-miR-4716-5p	CLIP-seq
MIRT1185279	hsa-miR-4719	CLIP-seq
MIRT1185280	hsa-miR-4725-3p	CLIP-seq
MIRT1185281	hsa-miR-4732-3p	CLIP-seq
MIRT1185282	hsa-miR-4740-5p	CLIP-seq
MIRT1185283	hsa-miR-4747-5p	CLIP-seq
MIRT1185284	hsa-miR-4757-5p	CLIP-seq
MIRT1185285	hsa-miR-4766-5p	CLIP-seq
MIRT1185286	hsa-miR-4772-5p	CLIP-seq
MIRT1185287	hsa-miR-4781-3p	CLIP-seq
MIRT1185288	hsa-miR-5095	CLIP-seq
MIRT1185289	hsa-miR-5096	CLIP-seq
MIRT1185290	hsa-miR-520f	CLIP-seq
MIRT1185291	hsa-miR-539	CLIP-seq
MIRT1185292	hsa-miR-548ae	CLIP-seq
MIRT1185293	hsa-miR-548aj	CLIP-seq
MIRT1185294	hsa-miR-548am	CLIP-seq
MIRT1185295	hsa-miR-548u	CLIP-seq
MIRT1185296	hsa-miR-548x	CLIP-seq
MIRT1185297	hsa-miR-564	CLIP-seq
MIRT1185298	hsa-miR-570	CLIP-seq
MIRT1185299	hsa-miR-576-5p	CLIP-seq
MIRT1185300	hsa-miR-596	CLIP-seq
MIRT1185301	hsa-miR-650	CLIP-seq
MIRT1185302	hsa-miR-670	CLIP-seq
MIRT1185303	hsa-miR-759	CLIP-seq
MIRT2053656	hsa-miR-122	CLIP-seq
MIRT2053657	hsa-miR-1228	CLIP-seq
MIRT2053658	hsa-miR-1245b-3p	CLIP-seq
MIRT1185221	hsa-miR-1273f	CLIP-seq
MIRT2053659	hsa-miR-1289	CLIP-seq
MIRT2053660	hsa-miR-130a	CLIP-seq
MIRT2053661	hsa-miR-130b	CLIP-seq
MIRT2053662	hsa-miR-183	CLIP-seq
MIRT1185226	hsa-miR-197	CLIP-seq
MIRT2053663	hsa-miR-301a	CLIP-seq
MIRT2053664	hsa-miR-301b	CLIP-seq
MIRT1185235	hsa-miR-3170	CLIP-seq
MIRT2053665	hsa-miR-3198	CLIP-seq
MIRT2053666	hsa-miR-3664-5p	CLIP-seq
MIRT1185248	hsa-miR-369-3p	CLIP-seq
MIRT1185250	hsa-miR-374a	CLIP-seq
MIRT1185251	hsa-miR-374b	CLIP-seq
MIRT1185254	hsa-miR-383	CLIP-seq
MIRT1185256	hsa-miR-410	CLIP-seq
MIRT1185257	hsa-miR-411	CLIP-seq
MIRT1185258	hsa-miR-412	CLIP-seq
MIRT2053667	hsa-miR-4294	CLIP-seq
MIRT2053668	hsa-miR-4309	CLIP-seq
MIRT1185268	hsa-miR-4438	CLIP-seq
MIRT2053669	hsa-miR-4534	CLIP-seq
MIRT2053670	hsa-miR-454	CLIP-seq
MIRT2053671	hsa-miR-4639-3p	CLIP-seq
MIRT1185278	hsa-miR-4716-5p	CLIP-seq
MIRT2053672	hsa-miR-4735-5p	CLIP-seq
MIRT2053673	hsa-miR-4742-3p	CLIP-seq
MIRT1185286	hsa-miR-4772-5p	CLIP-seq
MIRT2053674	hsa-miR-4775	CLIP-seq
MIRT1185287	hsa-miR-4781-3p	CLIP-seq
MIRT1185288	hsa-miR-5095	CLIP-seq
MIRT1185289	hsa-miR-5096	CLIP-seq
MIRT1185298	hsa-miR-570	CLIP-seq
MIRT2053675	hsa-miR-590-3p	CLIP-seq
MIRT2053676	hsa-miR-592	CLIP-seq
MIRT1185300	hsa-miR-596	CLIP-seq
MIRT2053677	hsa-miR-597	CLIP-seq
MIRT2053656	hsa-miR-122	CLIP-seq
MIRT2053660	hsa-miR-130a	CLIP-seq
MIRT2053661	hsa-miR-130b	CLIP-seq
MIRT2053662	hsa-miR-183	CLIP-seq
MIRT2282872	hsa-miR-28-3p	CLIP-seq
MIRT2053663	hsa-miR-301a	CLIP-seq
MIRT2053664	hsa-miR-301b	CLIP-seq
MIRT2053670	hsa-miR-454	CLIP-seq
MIRT1185233	hsa-miR-3140-3p	CLIP-seq
MIRT1185273	hsa-miR-4540	CLIP-seq
MIRT2431611	hsa-miR-1343	CLIP-seq
MIRT2431612	hsa-miR-4326	CLIP-seq
MIRT2455202	hsa-miR-3922-5p	CLIP-seq
MIRT2455203	hsa-miR-4753-5p	CLIP-seq
MIRT2455204	hsa-miR-548a-3p	CLIP-seq
MIRT2455205	hsa-miR-548e	CLIP-seq
MIRT2455206	hsa-miR-548f	CLIP-seq
MIRT1185298	hsa-miR-570	CLIP-seq
MIRT2455207	hsa-miR-618	CLIP-seq
MIRT2581067	hsa-miR-1284	CLIP-seq
MIRT2581068	hsa-miR-140-3p	CLIP-seq
MIRT2581069	hsa-miR-298	CLIP-seq
MIRT1185235	hsa-miR-3170	CLIP-seq
MIRT2581070	hsa-miR-329	CLIP-seq
MIRT2581071	hsa-miR-362-3p	CLIP-seq
MIRT1185248	hsa-miR-369-3p	CLIP-seq
MIRT1185250	hsa-miR-374a	CLIP-seq
MIRT1185251	hsa-miR-374b	CLIP-seq
MIRT2455202	hsa-miR-3922-5p	CLIP-seq
MIRT1185256	hsa-miR-410	CLIP-seq
MIRT2581072	hsa-miR-4275	CLIP-seq
MIRT2581073	hsa-miR-4659a-3p	CLIP-seq
MIRT2581074	hsa-miR-4659b-3p	CLIP-seq
MIRT2053673	hsa-miR-4742-3p	CLIP-seq
MIRT2455203	hsa-miR-4753-5p	CLIP-seq
MIRT2581075	hsa-miR-4795-5p	CLIP-seq
MIRT2455204	hsa-miR-548a-3p	CLIP-seq
MIRT2455205	hsa-miR-548e	CLIP-seq
MIRT2455206	hsa-miR-548f	CLIP-seq
MIRT2455207	hsa-miR-618	CLIP-seq
MIRT2581067	hsa-miR-1284	CLIP-seq
MIRT2581068	hsa-miR-140-3p	CLIP-seq
MIRT2581069	hsa-miR-298	CLIP-seq
MIRT1185235	hsa-miR-3170	CLIP-seq
MIRT1185248	hsa-miR-369-3p	CLIP-seq
MIRT1185250	hsa-miR-374a	CLIP-seq
MIRT1185251	hsa-miR-374b	CLIP-seq
MIRT2455202	hsa-miR-3922-5p	CLIP-seq
MIRT1185256	hsa-miR-410	CLIP-seq
MIRT2581073	hsa-miR-4659a-3p	CLIP-seq
MIRT2581074	hsa-miR-4659b-3p	CLIP-seq
MIRT2053673	hsa-miR-4742-3p	CLIP-seq
MIRT2455203	hsa-miR-4753-5p	CLIP-seq
MIRT2581075	hsa-miR-4795-5p	CLIP-seq
MIRT2455204	hsa-miR-548a-3p	CLIP-seq
MIRT2455205	hsa-miR-548e	CLIP-seq
MIRT2455206	hsa-miR-548f	CLIP-seq
MIRT2455207	hsa-miR-618	CLIP-seq

Gene ontology (GO) Show/Hide all (14)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003723	Function	RNA binding	HDA	22658674, 22681889
GO:0003723	Function	RNA binding	IEA
GO:0005515	Function	Protein binding	IPI	14660641, 17643419, 25416956, 30021884, 32814053, 33961781, 35271311
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005730	Component	Nucleolus	IBA
GO:0005730	Component	Nucleolus	IDA
GO:0005730	Component	Nucleolus	IEA
GO:0005737	Component	Cytoplasm	IEA
GO:0005829	Component	Cytosol	IDA
GO:0030687	Component	Preribosome, large subunit precursor	IBA
GO:0042254	Process	Ribosome biogenesis	IEA
GO:0042255	Process	Ribosome assembly	IEA
GO:0042273	Process	Ribosomal large subunit biogenesis	IBA

Other IDs

• MIM: 619204
• HGNC: 24328
• e!Ensembl: ENSG00000132603

Protein

• UniProt ID: Q9Y221
• Protein name: 60S ribosome subunit biogenesis protein NIP7 homolog (KD93) (Nucleolar pre-rRNA processing protein NIP7)
• Protein function: Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.
• PDB: 1SQW , 1T5Y , 8FKT , 8FKU , 8FKV , 8FKW , 8FKX , 8FKY
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF03657	UPF0113	96 → 175	UPF0113 PUA domain	Domain
  PF17833	UPF0113_N	2 → 83	UPF0113 Pre-PUA domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Expressed in hematopoietic stem/progenitor cells. {ECO:0000269|PubMed:15522784}.
• Sequence:

  MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG
  DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR
  ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT
  

• Sequence length: 180

Pathways

Reactome Pathway:

Major pathway of rRNA processing in the nucleolus and cytosol

Related Genes

No strongly related genes found yet for NIP7.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to NIP7.