MEF2B (myocyte enhancer factor 2B)

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Gene Gene ontology Other IDs Pathways Associated diseases Related genes Diseases linked via similar genes

Gene

• Entrez ID: 100271849
• Gene name: Myocyte enhancer factor 2B
• Gene symbol: MEF2B
• Synonyms (NCBI Gene): RSRFR2
• Chromosome: 19
• Chromosome location: 19p13.11
• Summary: The product of this gene is a member of the MADS/MEF2 family of DNA binding proteins. The protein is thought to regulate gene expression, including expression of the smooth muscle myosin heavy chain gene. This region undergoes considerable alternative spl

Gene ontology (GO) Show/Hide all (28)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000785	Component	Chromatin	ISA
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	7760790
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	ISA
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	IDA	7760790
GO:0003677	Function	DNA binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	NAS	8575763
GO:0005515	Function	Protein binding	IPI	12700764, 28514442, 32296183, 33961781
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	TAS	1516833
GO:0005654	Component	Nucleoplasm	IDA
GO:0005667	Component	Transcription regulator complex	IDA	15567413
GO:0005829	Component	Cytosol	IDA
GO:0007507	Process	Heart development	IBA
GO:0007517	Process	Muscle organ development	TAS	1516833
GO:0030054	Component	Cell junction	IDA
GO:0030154	Process	Cell differentiation	IBA
GO:0042826	Function	Histone deacetylase binding	IBA
GO:0042826	Function	Histone deacetylase binding	IPI	15567413
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IBA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	7760790
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0046983	Function	Protein dimerization activity	IEA
GO:0048513	Process	Animal organ development	IEA
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536

Other IDs

• MIM: 600661
• HGNC: 6995
• e!Ensembl: ENSG00000213999

Interactions View interactions

Pathways

KEGG Pathway	Reactome Pathway
cGMP-PKG signaling pathway	Myogenesis
Apelin signaling pathway

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Reference	Evidence Score
CHOLANGIOCARCINOMA	—	GWAS catalog	34594039	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MULTIPLE SCLEROSIS	—	GWAS catalog	31604244	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
NON-HODGKINS LYMPHOMA	—	GWAS catalog	37340002	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SCHIZOPHRENIA	—	GWAS catalog	34099189	★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Associations from Text Mining Show/Hide Text Mining Associations (26)
Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Adult Diffuse Large B-Cell Lymphoma	B-cell Lymphoma	BEFREE	23974956, 25769544, 30446717		★☆☆☆☆ Found in Text Mining only
B-Cell Lymphomas	B-Cell Lymphoma	BEFREE	28851661, 29309299, 30205047		★☆☆☆☆ Found in Text Mining only
Breast Carcinoma	Breast Carcinoma	BEFREE	29713055		★☆☆☆☆ Found in Text Mining only
Burkitt Lymphoma	Burkitt`s Lymphoma	BEFREE	29309299		★☆☆☆☆ Found in Text Mining only
Carcinogenesis	Carcinogenesis	Pubtator	26245647	Associate	★☆☆☆☆ Found in Text Mining only
Celiac Disease	Celiac disease	Pubtator	33362776	Associate	★☆☆☆☆ Found in Text Mining only
Colitis Ulcerative	Ulcerative colitis	Pubtator	16127744	Inhibit	★☆☆☆☆ Found in Text Mining only
Diffuse Large B-Cell Lymphoma	Diffuse Lymphoma	BEFREE	21796119, 23292937, 23974956, 25769544, 26245647, 29309299, 30446717		★☆☆☆☆ Found in Text Mining only
Hodgkin Disease	Hodgkin Disease	BEFREE	26506234, 29309299		★☆☆☆☆ Found in Text Mining only
Lymphoma	Lymphoma	BEFREE	29309299, 30205047		★☆☆☆☆ Found in Text Mining only
Lymphoma Follicular	Lymphoma	Pubtator	21796119, 28116089, 33211828	Associate	★☆☆☆☆ Found in Text Mining only
Lymphoma, Follicular	Lymphoma	BEFREE	21796119, 23974956, 29309299		★☆☆☆☆ Found in Text Mining only
Lymphoma, Non-Hodgkin	Non-Hodgkin lymphoma	BEFREE	26245647, 29477338		★☆☆☆☆ Found in Text Mining only
Lymphoma, Non-Hodgkin, Familial	Lymphoma	BEFREE	26245647, 29477338		★☆☆☆☆ Found in Text Mining only
Malignant lymphoma, lymphocytic, intermediate differentiation, diffuse	Malignant lymphoma, lymphocytic, intermediate differentiation	BEFREE	29309299		★☆☆☆☆ Found in Text Mining only
Malignant neoplasm of breast	Breast Cancer	BEFREE	29713055		★☆☆☆☆ Found in Text Mining only
Malignant Neoplasms	Malignant Neoplasm	BEFREE	29477338, 29713055		★☆☆☆☆ Found in Text Mining only
Mantle cell lymphoma	Mantle Cell Lymphoma	BEFREE	29309299		★☆☆☆☆ Found in Text Mining only
Marginal Zone B-Cell Lymphoma	B-Cell Lymphoma	BEFREE	29309299		★☆☆☆☆ Found in Text Mining only
Mediastinal (Thymic) Large B-Cell Lymphoma	B-Cell Lymphoma	BEFREE	28851661		★☆☆☆☆ Found in Text Mining only
Mucosa-Associated Lymphoid Tissue Lymphoma	Mucosa-associated lymphoma	BEFREE	29309299		★☆☆☆☆ Found in Text Mining only
Multiple Myeloma	Multiple myeloma	Pubtator	39769169	Associate	★☆☆☆☆ Found in Text Mining only
Multiple Sclerosis	Multiple Sclerosis	BEFREE	20079437		★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Neoplasms	Neoplasms	BEFREE	24145436, 30514247		★☆☆☆☆ Found in Text Mining only
Nodular Lymphocyte Predominant Hodgkin Lymphoma	Classical Hodgkin lymphoma	BEFREE	28851661		★☆☆☆☆ Found in Text Mining only
Sarcoma	Sarcoma	Pubtator	22302709	Associate	★☆☆☆☆ Found in Text Mining only

Related Genes

Sort by: Blended Diseases Pathways Evidence source

BORCS8-MEF2B 1 shared diseaseNon-hodgkins lymphoma 3 shared pathwayscGMP-PKG signaling pathway, Apelin signaling pathway, Myogenesis 1 shared evidence sourceGWAS catalog (Non-hodgkins lymphoma) Related via 3 shared pathways including cGMP-PKG signaling pathway, Apelin signaling pathway — evidence mostly GWAS catalog. SP140 2 shared diseasesCholangiocarcinoma, Non-hodgkins lymphoma 2 shared evidence sourcesGWAS catalog (Cholangiocarcinoma), GWAS catalog (Non-hodgkins lymphoma) Related via 2 shared diseases including Cholangiocarcinoma, Non-hodgkins lymphoma — evidence mostly GWAS catalog. MEF2A 3 shared pathwayscGMP-PKG signaling pathway, Apelin signaling pathway, Myogenesis Related via 3 shared pathways including cGMP-PKG signaling pathway, Apelin signaling pathway. MEF2D 3 shared pathwayscGMP-PKG signaling pathway, Apelin signaling pathway, Myogenesis Related via 3 shared pathways including cGMP-PKG signaling pathway, Apelin signaling pathway. MEF2C 3 shared pathwayscGMP-PKG signaling pathway, Apelin signaling pathway, Myogenesis Related via 3 shared pathways including cGMP-PKG signaling pathway, Apelin signaling pathway.

Related Gene	Shared Diseases	Shared Disease Names	Shared Pathways	Shared Pathway Names	Shared Evidence Sources	Shared Evidence Names
BORCS8-MEF2B	1	["Non-hodgkins lymphoma"]	3	["cGMP-PKG signaling pathway","Apelin signaling pathway","Myogenesis"]	1	["GWAS catalog (Non-hodgkins lymphoma)"]
SP140	2	["Cholangiocarcinoma","Non-hodgkins lymphoma"]	0	[]	2	["GWAS catalog (Cholangiocarcinoma)","GWAS catalog (Non-hodgkins lymphoma)"]
MEF2A	0	[]	3	["cGMP-PKG signaling pathway","Apelin signaling pathway","Myogenesis"]	0	[]
MEF2D	0	[]	3	["cGMP-PKG signaling pathway","Apelin signaling pathway","Myogenesis"]	0	[]
MEF2C	0	[]	3	["cGMP-PKG signaling pathway","Apelin signaling pathway","Myogenesis"]	0	[]

Diseases Linked via Similar Genes

Ankylosing spondylitis Linked via 1 of 5 related genesSP140 Lymphocytic leukemia Linked via 1 of 5 related genesSP140 Colorectal cancer Linked via 1 of 5 related genesSP140 Crohn disease Linked via 1 of 5 related genesSP140 Hepatic veno occlusive disease with immunodeficiency Linked via 1 of 5 related genesSP140

Disease	Linked Via (Gene Count)	Linked Via (Gene Names)
Ankylosing spondylitis	1	["SP140"]
Lymphocytic leukemia	1	["SP140"]
Colorectal cancer	1	["SP140"]
Crohn disease	1	["SP140"]
Hepatic veno occlusive disease with immunodeficiency	1	["SP140"]