LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1)

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Gene miRNA Gene ontology Other IDs Protein Diseases linked via similar genes

Gene

• Entrez ID: 26103
• Gene name: Leucine rich repeat, Ig-like and transmembrane domains 1
• Gene symbol: LRIT1
• Synonyms (NCBI Gene): FIGLER9, LRRC21, PAL
• Chromosome: 10
• Chromosome location: 10q23.1

miRNA Show/Hide all (53)

miRTarBase ID	miRNA	Experiments	Reference
MIRT036337	hsa-miR-1229-3p	CLASH	23622248
MIRT1117730	hsa-miR-125a-3p	CLIP-seq
MIRT1117731	hsa-miR-1262	CLIP-seq
MIRT1117732	hsa-miR-3136-5p	CLIP-seq
MIRT1117733	hsa-miR-3934	CLIP-seq
MIRT1117734	hsa-miR-4438	CLIP-seq
MIRT1117735	hsa-miR-4439	CLIP-seq
MIRT1117736	hsa-miR-4481	CLIP-seq
MIRT1117737	hsa-miR-4513	CLIP-seq
MIRT1117738	hsa-miR-4701-3p	CLIP-seq
MIRT1117739	hsa-miR-4742-5p	CLIP-seq
MIRT1117740	hsa-miR-4745-5p	CLIP-seq
MIRT1117741	hsa-miR-5095	CLIP-seq
MIRT1117742	hsa-miR-510	CLIP-seq
MIRT1117743	hsa-miR-512-5p	CLIP-seq
MIRT1117744	hsa-miR-764	CLIP-seq
MIRT2263602	hsa-miR-15a	CLIP-seq
MIRT2263603	hsa-miR-15b	CLIP-seq
MIRT2263604	hsa-miR-16	CLIP-seq
MIRT2263605	hsa-miR-195	CLIP-seq
MIRT2263606	hsa-miR-302a	CLIP-seq
MIRT2263607	hsa-miR-302b	CLIP-seq
MIRT2263608	hsa-miR-302c	CLIP-seq
MIRT2263609	hsa-miR-302d	CLIP-seq
MIRT2263610	hsa-miR-302e	CLIP-seq
MIRT2263611	hsa-miR-3137	CLIP-seq
MIRT2263612	hsa-miR-372	CLIP-seq
MIRT2263613	hsa-miR-373	CLIP-seq
MIRT2263614	hsa-miR-424	CLIP-seq
MIRT2263615	hsa-miR-4524	CLIP-seq
MIRT2263616	hsa-miR-4720-3p	CLIP-seq
MIRT2263617	hsa-miR-4804-3p	CLIP-seq
MIRT2263618	hsa-miR-497	CLIP-seq
MIRT2263619	hsa-miR-503	CLIP-seq
MIRT2263620	hsa-miR-519a	CLIP-seq
MIRT2263621	hsa-miR-519b-3p	CLIP-seq
MIRT2263622	hsa-miR-519c-3p	CLIP-seq
MIRT2263623	hsa-miR-520a-3p	CLIP-seq
MIRT2263624	hsa-miR-520b	CLIP-seq
MIRT2263625	hsa-miR-520c-3p	CLIP-seq
MIRT2263626	hsa-miR-520d-3p	CLIP-seq
MIRT2263627	hsa-miR-520e	CLIP-seq
MIRT2263628	hsa-miR-520f	CLIP-seq
MIRT2263629	hsa-miR-646	CLIP-seq
MIRT2263602	hsa-miR-15a	CLIP-seq
MIRT2263603	hsa-miR-15b	CLIP-seq
MIRT2263604	hsa-miR-16	CLIP-seq
MIRT2263605	hsa-miR-195	CLIP-seq
MIRT2263614	hsa-miR-424	CLIP-seq
MIRT2263615	hsa-miR-4524	CLIP-seq
MIRT2263618	hsa-miR-497	CLIP-seq
MIRT2263619	hsa-miR-503	CLIP-seq
MIRT2263629	hsa-miR-646	CLIP-seq

Gene ontology (GO) Show/Hide all (14)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005783	Component	Endoplasmic reticulum	IEA
GO:0005789	Component	Endoplasmic reticulum membrane	IBA
GO:0005789	Component	Endoplasmic reticulum membrane	IEA
GO:0005789	Component	Endoplasmic reticulum membrane	ISS
GO:0007601	Process	Visual perception	IEA
GO:0007601	Process	Visual perception	IEA
GO:0007602	Process	Phototransduction	IEA
GO:0009416	Process	Response to light stimulus	IEA
GO:0016020	Component	Membrane	IEA
GO:0030425	Component	Dendrite	IEA
GO:0042995	Component	Cell projection	IEA
GO:0043083	Component	Synaptic cleft	IEA
GO:0045202	Component	Synapse	IEA
GO:0099536	Process	Synaptic signaling	IEA

Other IDs

• MIM: 616103
• HGNC: 23404
• e!Ensembl: ENSG00000148602

Protein

• UniProt ID: Q9P2V4
• Protein name: Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1 (Leucine-rich repeat-containing protein 21) (Photoreceptor-associated LRR superfamily protein) (Retina-specific protein PAL)
• Protein function: Photoreceptor synaptic protein essential for normal vision (By similarity). Involved in synapse formation in cone photoreceptor cells (By similarity).
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00041	fn3	430 → 502	Fibronectin type III domain	Domain
  PF07679	I-set	256 → 345	Immunoglobulin I-set domain	Domain
  PF13855	LRR_8	121 → 183	Leucine rich repeat	Repeat

• Sequence:

  MRVALGMLWLLALAWPPQARGFCPSQCSCSLHIMGDGSKARTVVCNDPDMTLPPASIPPD
  TSRLRLERTAIRRVPGEAFRPLGRLEQLWLPYNALSELNALMLRGLRRLRELRLPGNRLA
  AFPWAALRDAPKLRLLDLQANRLSAVPAEAARFLENLTFLDLSSNQLMRLPQELIVSWAH
  LETGIFPPGHHPRRVLGLQDNPWACDCRLYDLVHLLDGWAPNLAFIETELRCASPRSLAG
  VAFSQLELRKCQGPELHPGVASIRSLLGGTALLRCGATGVPGPEMSWRRANGRPLNGTVH
  QEVSSDGTSWTLLGLPAVSHLDSGDYICQAKNFLGASETVISLIVTEPPTSTEHSGSPGA
  LWARTGGGGEAAAYNNKLVARHVPQIPKPAVLATGPSVPSTKEELTLEHFQMDALGELSD
  GRAGPSEARMVRSVKVVGDTYHSVSLVWKAPQAKNTTAFSVLYAVFGQHSMRRVIVQPGK
  TRVTITGLLPKTKYVACVCVQGLVPRKEQCVIFSTNEVVDAENTQQLINVVVISVAIVIA
  LPLTLLVCCSALQKRCRKCFNKDSTEATVTYVNLERLGYSEDGLEELSRHSVSEADRLLS
  ARSSVDFQAFGVKGGRRINEYFC

• Sequence length: 623

Related Genes

No strongly related genes found yet for LRIT1.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to LRIT1.