Gene Gene information from NCBI Gene database.
Entrez ID 2262
Gene name Glypican 5
Gene symbol GPC5
Synonyms (NCBI Gene)
-
Chromosome 13
Chromosome location 13q31.3
Summary Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protei
miRNA miRNA information provided by mirtarbase database.
132
miRTarBase ID miRNA Experiments Reference
MIRT438314 hsa-miR-217 Luciferase reporter assayNorthern blotqRT-PCRWestern blot 26098560
MIRT438314 hsa-miR-217 Luciferase reporter assayNorthern blotqRT-PCRWestern blot 26098560
MIRT438314 hsa-miR-217 Luciferase reporter assayNorthern blotqRT-PCRWestern blot 26098560
MIRT438314 hsa-miR-217 Luciferase reporter assayNorthern blotqRT-PCRWestern blot 26098560
MIRT657706 hsa-miR-548ac HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 30282023, 32814053, 35512704
GO:0005576 Component Extracellular region IEA
GO:0005576 Component Extracellular region TAS
GO:0005796 Component Golgi lumen TAS
GO:0005886 Component Plasma membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602446 4453 ENSG00000179399
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P78333
Protein name Glypican-5 [Cleaved into: Secreted glypican-5]
Protein function Cell surface proteoglycan that bears heparan sulfate.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01153 Glypican 12 570 Glypican Family
Tissue specificity TISSUE SPECIFICITY: In adult, primarily expressed in the brain. Also detected in fetal brain, lung and liver. {ECO:0000269|PubMed:9070915, ECO:0000269|PubMed:9331333}.
Sequence
Sequence length 572
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CERVICAL CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis BEFREE 16596674
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 20304703, 24682381, 27157618, 27554041, 27806326
★☆☆☆☆
Found in Text Mining only
AMYLOIDOSIS, HEREDITARY, TRANSTHYRETIN-RELATED Amyloidosis BEFREE 30414409
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 29407175
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 30423114 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 32970968 Inhibit
★☆☆☆☆
Found in Text Mining only
Carcinoma Endometrioid Endometrioid carcinoma Pubtator 26399219 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 25818666 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 20304703, 22236185, 24456789, 25999661, 27157618, 27806326
★☆☆☆☆
Found in Text Mining only
Carcinoma Ovarian Epithelial Epithelial ovarian carcinoma Pubtator 26399219 Associate
★☆☆☆☆
Found in Text Mining only