CSDC2 (cold shock domain containing C2)

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Gene miRNA Gene ontology Other IDs Protein Related genes Diseases linked via similar genes

Gene

• Entrez ID: 27254
• Gene name: Cold shock domain containing C2
• Gene symbol: CSDC2
• Synonyms (NCBI Gene): PIPPIN, dJ347H13.2
• Chromosome: 22
• Chromosome location: 22q13.2

miRNA Show/Hide all (92)

miRTarBase ID	miRNA	Experiments	Reference
MIRT001931	hsa-miR-373-3p	qRT-PCR, ChIP	18227514
MIRT513153	hsa-miR-1295b-5p	PAR-CLIP	23446348
MIRT513154	hsa-miR-1912	PAR-CLIP	23446348
MIRT513152	hsa-miR-4524b-3p	PAR-CLIP	23446348
MIRT513151	hsa-miR-1910-3p	PAR-CLIP	23446348
MIRT513150	hsa-miR-6511a-5p	PAR-CLIP	23446348
MIRT513149	hsa-miR-7160-3p	PAR-CLIP	23446348
MIRT513148	hsa-miR-1324	PAR-CLIP	23446348
MIRT513147	hsa-miR-4257	PAR-CLIP	23446348
MIRT513146	hsa-miR-3918	PAR-CLIP	23446348
MIRT513145	hsa-miR-1827	PAR-CLIP	23446348
MIRT513144	hsa-miR-6134	PAR-CLIP	23446348
MIRT513143	hsa-miR-3166	PAR-CLIP	23446348
MIRT513142	hsa-miR-4290	PAR-CLIP	23446348
MIRT513141	hsa-miR-3612	PAR-CLIP	23446348
MIRT513140	hsa-miR-650	PAR-CLIP	23446348
MIRT513139	hsa-miR-6880-5p	PAR-CLIP	23446348
MIRT513138	hsa-miR-7847-3p	PAR-CLIP	23446348
MIRT513137	hsa-miR-4443	PAR-CLIP	23446348
MIRT440872	hsa-miR-218-5p	HITS-CLIP	23212916
MIRT440872	hsa-miR-218-5p	HITS-CLIP	23212916
MIRT001931	hsa-miR-373-3p	Western blotting, qRT-PCR	31572429
MIRT513153	hsa-miR-1295b-5p	PAR-CLIP	23446348
MIRT513154	hsa-miR-1912	PAR-CLIP	23446348
MIRT513152	hsa-miR-4524b-3p	PAR-CLIP	23446348
MIRT513151	hsa-miR-1910-3p	PAR-CLIP	23446348
MIRT513150	hsa-miR-6511a-5p	PAR-CLIP	23446348
MIRT513149	hsa-miR-7160-3p	PAR-CLIP	23446348
MIRT513148	hsa-miR-1324	PAR-CLIP	23446348
MIRT513147	hsa-miR-4257	PAR-CLIP	23446348
MIRT513146	hsa-miR-3918	PAR-CLIP	23446348
MIRT513145	hsa-miR-1827	PAR-CLIP	23446348
MIRT513144	hsa-miR-6134	PAR-CLIP	23446348
MIRT513143	hsa-miR-3166	PAR-CLIP	23446348
MIRT513142	hsa-miR-4290	PAR-CLIP	23446348
MIRT513141	hsa-miR-3612	PAR-CLIP	23446348
MIRT513140	hsa-miR-650	PAR-CLIP	23446348
MIRT513139	hsa-miR-6880-5p	PAR-CLIP	23446348
MIRT513138	hsa-miR-7847-3p	PAR-CLIP	23446348
MIRT513137	hsa-miR-4443	PAR-CLIP	23446348
MIRT911447	hsa-miR-149	CLIP-seq
MIRT911448	hsa-miR-2277-3p	CLIP-seq
MIRT911449	hsa-miR-2682	CLIP-seq
MIRT911450	hsa-miR-3138	CLIP-seq
MIRT911451	hsa-miR-3199	CLIP-seq
MIRT911452	hsa-miR-34a	CLIP-seq
MIRT911453	hsa-miR-34c-5p	CLIP-seq
MIRT911454	hsa-miR-4462	CLIP-seq
MIRT911455	hsa-miR-449a	CLIP-seq
MIRT911456	hsa-miR-449b	CLIP-seq
MIRT911457	hsa-miR-449c	CLIP-seq
MIRT911458	hsa-miR-4513	CLIP-seq
MIRT911459	hsa-miR-4520a-3p	CLIP-seq
MIRT911460	hsa-miR-4640-5p	CLIP-seq
MIRT911461	hsa-miR-4726-5p	CLIP-seq
MIRT911462	hsa-miR-4740-5p	CLIP-seq
MIRT911463	hsa-miR-4786-3p	CLIP-seq
MIRT911464	hsa-miR-602	CLIP-seq
MIRT1921566	hsa-miR-1910	CLIP-seq
MIRT1921567	hsa-miR-223	CLIP-seq
MIRT1921568	hsa-miR-331-3p	CLIP-seq
MIRT1921569	hsa-miR-455-3p	CLIP-seq
MIRT1921570	hsa-miR-4697-3p	CLIP-seq
MIRT1921571	hsa-miR-4722-3p	CLIP-seq
MIRT1921566	hsa-miR-1910	CLIP-seq
MIRT1921567	hsa-miR-223	CLIP-seq
MIRT1921568	hsa-miR-331-3p	CLIP-seq
MIRT1921569	hsa-miR-455-3p	CLIP-seq
MIRT1921570	hsa-miR-4697-3p	CLIP-seq
MIRT1921571	hsa-miR-4722-3p	CLIP-seq
MIRT1970266	hsa-miR-1205	CLIP-seq
MIRT1970267	hsa-miR-1252	CLIP-seq
MIRT1970268	hsa-miR-4476	CLIP-seq
MIRT1970269	hsa-miR-4533	CLIP-seq
MIRT2509419	hsa-miR-3126-5p	CLIP-seq
MIRT2509420	hsa-miR-3202	CLIP-seq
MIRT2509421	hsa-miR-4303	CLIP-seq
MIRT2509422	hsa-miR-4419a	CLIP-seq
MIRT2509423	hsa-miR-4510	CLIP-seq
MIRT2509424	hsa-miR-4645-5p	CLIP-seq
MIRT2509425	hsa-miR-4649-3p	CLIP-seq
MIRT2509426	hsa-miR-4673	CLIP-seq
MIRT2509427	hsa-miR-4747-5p	CLIP-seq
MIRT2509419	hsa-miR-3126-5p	CLIP-seq
MIRT2509420	hsa-miR-3202	CLIP-seq
MIRT2509421	hsa-miR-4303	CLIP-seq
MIRT2509422	hsa-miR-4419a	CLIP-seq
MIRT2509423	hsa-miR-4510	CLIP-seq
MIRT2509424	hsa-miR-4645-5p	CLIP-seq
MIRT2509425	hsa-miR-4649-3p	CLIP-seq
MIRT2509426	hsa-miR-4673	CLIP-seq
MIRT2509427	hsa-miR-4747-5p	CLIP-seq

Gene ontology (GO) Show/Hide all (10)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003676	Function	Nucleic acid binding	IEA
GO:0003723	Function	RNA binding	IEA
GO:0003723	Function	RNA binding	NAS	12801884
GO:0003730	Function	MRNA 3'-UTR binding	IBA
GO:0005515	Function	Protein binding	IPI	25416956, 31515488, 32296183
GO:0005634	Component	Nucleus	IEA
GO:0005737	Component	Cytoplasm	IBA
GO:0005737	Component	Cytoplasm	IEA
GO:0006397	Process	MRNA processing	IEA
GO:0043488	Process	Regulation of mRNA stability	IBA

Other IDs

• MIM: 617689
• HGNC: 30359
• e!Ensembl: ENSG00000172346

Protein

• UniProt ID: Q9Y534
• Protein name: Cold shock domain-containing protein C2 (RNA-binding protein PIPPin)
• Protein function: RNA-binding factor which binds specifically to the very 3'-UTR ends of both histone H1 and H3.3 mRNAs, encompassing the polyadenylation signal. Might play a central role in the negative regulation of histone variant synthesis in the developing b
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF00313	CSD	69 → 135		Domain

• Sequence:

  MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
  ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
  PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS

• Sequence length: 153

Related Genes

No strongly related genes found yet for CSDC2.

Diseases Linked via Similar Genes

No additional diseases found yet through genes similar to CSDC2.