Gene Gene information from NCBI Gene database.
Entrez ID 9949
Gene name AMMECR nuclear protein 1
Gene symbol AMMECR1
Synonyms (NCBI Gene)
AMMERC1MFHIEN
Chromosome X
Chromosome location Xq23
Summary The exact function of this gene is not known, however, submicroscopic deletion of the X chromosome including this gene, COL4A5, and FACL4 genes, result in a contiguous gene deletion syndrome, the AMME complex (Alport syndrome, mental retardation, midface
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs1057519337 C>T Pathogenic Missense variant, coding sequence variant, intron variant
rs1057519338 G>A Pathogenic Coding sequence variant, stop gained, intron variant
miRNA miRNA information provided by mirtarbase database.
461
miRTarBase ID miRNA Experiments Reference
MIRT004965 hsa-let-7a-5p qRT-PCR 17942906
MIRT004949 hsa-miR-98-5p qRT-PCR 17942906
MIRT019948 hsa-miR-375 Microarray 20215506
MIRT022777 hsa-miR-124-3p Microarray 18668037
MIRT024255 hsa-miR-215-5p Microarray 19074876
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
6
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 21304492, 25416956, 26871637, 31515488, 32296183, 32814053
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 27811305
GO:0005634 Component Nucleus IEA
GO:0005654 Component Nucleoplasm IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300195 467 ENSG00000101935
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y4X0
Protein name Nuclear protein AMMECR1 (AMME syndrome candidate gene 1 protein)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01871 AMMECR1 131 302 AMMECR1 Family
Sequence
MAAGCCGVKKQKLSSSPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTRLNGLGGLT
GGGSGSGCTLSPPQGCGGGGGGIALSPPPSCGVGTLLSTPAAATSSSPSSSSAASSSSPG
SRKMVVSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKIGRDKRLRGCIGTFS
AMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIR
IEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSE
KM
TLSYAEYLAHRQHHHFQNGIGHPLPPYNHYS
Sequence length 333
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
7
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis Likely pathogenic; Pathogenic rs2522493719, rs1057519337, rs765498367, rs1569405174, rs750022919 RCV003333540
RCV000416359
RCV000515137
RCV003313164
RCV001293686
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Short stature Pathogenic rs1569405174 RCV000736184
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALPORT SYNDROME-INTELLECTUAL DISABILITY-MIDFACE HYPOPLASIA-ELLIPTOCYTOSIS SYNDROME GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMMECR1-related disorder Uncertain significance; Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MIDFACE HYPOPLASIA-HEARING IMPAIRMENT-ELLIPTOCYTOSIS-NEPHROCALCINOSIS SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alport Syndrome Alport Syndrome BEFREE 30737907
★☆☆☆☆
Found in Text Mining only
Alport Syndrome, Mental Retardation, Midface Hypoplasia, and Elliptocytosis Amme complex ORPHANET_DG 10049589, 27811305
★☆☆☆☆
Found in Text Mining only
Alport Syndrome, Mental Retardation, Midface Hypoplasia, and Elliptocytosis Amme complex BEFREE 10828604, 28089922, 30737907
★☆☆☆☆
Found in Text Mining only
Alport syndrome-intellectual disability-midface hypoplasia-elliptocytosis syndrome Alport Syndrome-Intellectual Disability-Midface Hypoplasia-Elliptocytosis Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia Anemia BEFREE 28089922
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 27811305 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 31519561
★☆☆☆☆
Found in Text Mining only
Cleft Palate Cleft palate Pubtator 27811305, 35084080 Associate
★☆☆☆☆
Found in Text Mining only
Clinodactyly of the 5th finger Camptodactyly of fingers HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Abnormalities Congenital abnormalities Pubtator 35084080 Associate
★☆☆☆☆
Found in Text Mining only