Gene Gene information from NCBI Gene database.
Entrez ID 9581
Gene name Prolyl endopeptidase like
Gene symbol PREPL
Synonyms (NCBI Gene)
CMS22
Chromosome 2
Chromosome location 2p21
Summary The protein encoded by this gene belongs to the prolyl oligopeptidase subfamily of serine peptidases. Mutations in this gene have been associated with hypotonia-cystinuria syndrome, also known as the 2p21 deletion syndrome. Several alternatively spliced t
SNPs SNP information provided by dbSNP.
18
SNP ID Visualize variation Clinical significance Consequence
rs111438719 T>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs113272276 T>C Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs145356495 G>A Pathogenic Coding sequence variant, stop gained
rs148092524 C>A,T Likely-pathogenic Splice donor variant
rs748639083 AACA>- Pathogenic Frameshift variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
480
miRTarBase ID miRNA Experiments Reference
MIRT030991 hsa-miR-21-5p Microarray 18591254
MIRT045698 hsa-miR-125a-5p CLASH 23622248
MIRT555255 hsa-miR-5000-5p PAR-CLIP 21572407
MIRT555254 hsa-miR-16-2-3p PAR-CLIP 21572407
MIRT555253 hsa-miR-195-3p PAR-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0004252 Function Serine-type endopeptidase activity IEA
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IEA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005794 Component Golgi apparatus IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609557 30228 ENSG00000138078
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q4J6C6
Protein name Prolyl endopeptidase-like (EC 3.4.21.-) (Prolylendopeptidase-like)
Protein function Serine peptidase whose precise substrate specificity remains unclear (PubMed:16143824, PubMed:16385448, PubMed:28726805). Does not cleave peptides after a arginine or lysine residue (PubMed:16143824). Regulates trans-Golgi network morphology and
PDB 7OBM , 8RFB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02897 Peptidase_S9_N 81 430 Prolyl oligopeptidase, N-terminal beta-propeller domain Domain
PF00326 Peptidase_S9 488 711 Prolyl oligopeptidase family Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in pyramidal neurons of the temporal cortex and neocortex (at protein level) (PubMed:23485813). Widely expressed (PubMed:15913950, PubMed:16385448). Expressed at higher level in brain, skeletal muscle, heart and kidney (PubMe
Sequence
Sequence length 727
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Melanoma Likely pathogenic rs768538177 RCV005930434
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myasthenic syndrome, congenital, 22 Likely pathogenic; Pathogenic rs1673169930, rs2104270031, rs2103925424, rs2103986758, rs779879227, rs374594354, rs983509465, rs2103914962, rs2466093446, rs768538177, rs753545038, rs2466493117, rs775136514, rs1674217480, rs2466493535
View all (22 more)
RCV001331527
RCV001386921
RCV002037702
RCV002012052
RCV001921543
View all (33 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Premature ovarian insufficiency Pathogenic rs1558502635 RCV000766144
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
PREPL-related disorder Likely pathogenic; Pathogenic rs1057523690, rs200761047, rs775517492 RCV003419005
RCV003431125
RCV003420265
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATYPICAL HYPOTONIA CYSTINURIA SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATYPICAL HYPOTONIA-CYSTINURIA SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
2p21 microdeletion syndrome 2p21 microdeletion syndrome ORPHANET_DG 11524703
★☆☆☆☆
Found in Text Mining only
2p21 microdeletion syndrome 2p21 microdeletion syndrome Orphanet
★☆☆☆☆
Found in Text Mining only
2p21 microdeletion syndrome without cystinuria 2p21 microdeletion syndrome without cystinuria ORPHANET_DG 23794250
★☆☆☆☆
Found in Text Mining only
2p21 microdeletion syndrome without cystinuria 2p21 microdeletion syndrome without cystinuria Orphanet
★☆☆☆☆
Found in Text Mining only
Atypical hypotonia-cystinuria syndrome Hypotonia-Cystinuria Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Clumsiness - motor delay Motor delay HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Epicanthus Congenital Epicanthus HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Myasthenic Syndromes, Postsynaptic Myasthenic Syndrome CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Congenital Myasthenic Syndromes, Presynaptic Myasthenic Syndrome CTD_human_DG
★☆☆☆☆
Found in Text Mining only