Gene Gene information from NCBI Gene database.
Entrez ID 9496
Gene name T-box transcription factor 4
Gene symbol TBX4
Synonyms (NCBI Gene)
ICPPSPAPPASSPS
Chromosome 17
Chromosome location 17q23.2
Summary This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. This gene is the human homolog of mous
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs28936696 A>G Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs28938474 G>T Pathogenic Missense variant, coding sequence variant
rs104894648 C>T Pathogenic Stop gained, coding sequence variant
rs754897911 C>-,CC Likely-pathogenic, uncertain-significance Coding sequence variant, genic downstream transcript variant, frameshift variant
rs886041115 T>G Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
347
miRTarBase ID miRNA Experiments Reference
MIRT025176 hsa-miR-181a-5p Microarray 17612493
MIRT607705 hsa-miR-8485 HITS-CLIP 23313552
MIRT607702 hsa-miR-603 HITS-CLIP 23313552
MIRT607701 hsa-miR-6757-3p HITS-CLIP 23313552
MIRT607700 hsa-miR-6128 HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
PITX1 Unknown 20598276
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601719 11603 ENSG00000121075
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P57082
Protein name T-box transcription factor TBX4 (T-box protein 4)
Protein function Transcriptional regulator that has an essential role in the organogenesis of lungs, pelvis, and hindlimbs.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00907 T-box 69 251 T-box Domain
Sequence
MLQDKGLSESEEAFRAPGPALGEASAANAPEPALAAPGLSGAALGSPPGPGADVVAAAAA
EQTIENIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIV
PADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDP
FGHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCTHVFPETSFISVTSYQNHKITQLKI
ENNPFAKGFRG
SDDSDLRVARLQSKEYPVISKSIMRQRLISPQLSATPDVGPLLGTHQAL
QHYQHENGAHSQLAEPQDLPLSTFPTQRDSSLFYHCLKRRDGTRHLDLPCKRSYLEAPSS
VGEDHYFRSPPPYDQQMLSPSYCSEVTPREACMYSGSGPEIAGVSGVDDLPPPPLSCNMW
TSVSPYTSYSVQTMETVPYQPFPTHFTATTMMPRLPTLSAQSSQPPGNAHFSVYNQLSQS
QVRERGPSASFPRERGLPQGCERKPPSPHLNAANEFLYSQTFSLSRESSLQYHSGMGTVE
NWTDG
Sequence length 545
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of prenatal development or birth Pathogenic rs1603251001 RCV001814249
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive amelia Pathogenic rs2143821228, rs1603251494, rs1603251001 RCV001829353
RCV001251075
RCV000993789
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Coxopodopatellar syndrome Likely pathogenic; Pathogenic rs1428934331, rs774711057, rs1569046598, rs2143860927, rs868469301, rs1159276152, rs28938474, rs104894648, rs28936696, rs2509555498, rs1555882291, rs1569044884, rs1569036773, rs1603251494, rs1603248606
View all (6 more)
RCV001827592
RCV002074388
RCV001829334
RCV001829359
RCV002249189
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Primary pulmonary hypoplasia Likely pathogenic; Pathogenic rs754897911 RCV001843368
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
17Q23.1Q23.2 MICRODELETION SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMELIA, AUTOSOMAL RECESSIVE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMELIA, POSTERIOR, WITH PELVIC AND PULMONARY HYPOPLASIA SYNDROME HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHROPATHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
17q23.1q23.2 microdeletion syndrome 17q23.1-Q23.2 Deletion Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alveolar capillary dysplasia Alveolar capillary dysplasia Pubtator 37821225, 40008593 Associate
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 21954337
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 30252721, 30878321, 31675602
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 30252721, 30878321, 31675602
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 29070031 Associate
★☆☆☆☆
Found in Text Mining only
Ataxia Telangiectasia Ataxia telangiectasia Pubtator 35852389 Associate
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Blindness Blindness Pubtator 31761294 Associate
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 19454617 Associate
★☆☆☆☆
Found in Text Mining only