Gene Gene information from NCBI Gene database.
Entrez ID 9409
Gene name Peroxisomal biogenesis factor 16
Gene symbol PEX16
Synonyms (NCBI Gene)
PBD8APBD8B
Chromosome 11
Chromosome location 11p11.2
Summary The protein encoded by this gene is an integral peroxisomal membrane protein. An inactivating nonsense mutation localized to this gene was observed in a patient with Zellweger syndrome of the complementation group CGD/CG9. Expression of this gene product
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs61752117 G>A Pathogenic Coding sequence variant, stop gained
rs144063598 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs144897515 A>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, synonymous variant, intron variant
rs146657010 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, intron variant
rs149348130 C>A Uncertain-significance, benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
58
miRTarBase ID miRNA Experiments Reference
MIRT022948 hsa-miR-124-3p Microarray 18668037
MIRT713415 hsa-miR-4286 HITS-CLIP 19536157
MIRT713414 hsa-miR-6887-3p HITS-CLIP 19536157
MIRT713413 hsa-miR-6752-3p HITS-CLIP 19536157
MIRT713412 hsa-miR-7113-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 12096124, 14709540, 15713480, 16280322, 19114594, 20531392, 25416956, 29997244, 31467278, 32296183, 32814053, 33961781, 37398436, 38225382
GO:0005777 Component Peroxisome IDA 9837814, 15813749, 21768384
GO:0005777 Component Peroxisome IEA
GO:0005778 Component Peroxisomal membrane HDA 21525035
GO:0005778 Component Peroxisomal membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603360 8857 ENSG00000121680
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y5Y5
Protein name Peroxisomal membrane protein PEX16 (Peroxin-16) (Peroxisomal biogenesis factor 16)
Protein function Required for peroxisome membrane biogenesis. May play a role in early stages of peroxisome assembly. Can recruit other peroxisomal proteins, such as PEX3 and PMP34, to de novo peroxisomes derived from the endoplasmic reticulum (ER). May function
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08610 Pex16 9 329 Peroxisomal membrane protein (Pex16) Family
Sequence
Sequence length 336
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Peroxisome   Class I peroxisomal membrane protein import
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
28
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Ovarian serous cystadenocarcinoma Likely pathogenic rs2494905864 RCV005931350
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Peroxisome biogenesis disorder Likely pathogenic; Pathogenic rs2134691627, rs2134699162, rs2134699707, rs2086772786, rs2134692559, rs2134695309, rs1218545995, rs2086807269, rs2134692847, rs1590798080, rs1355804755, rs778478085, rs1447178623, rs61752117, rs2494905042
View all (13 more)
RCV001379404
RCV001385073
RCV001381763
RCV002021992
RCV001921085
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Peroxisome biogenesis disorder 8A (Zellweger) Pathogenic; Likely pathogenic rs61752117, rs267608185, rs769772100 RCV000006837
RCV000006839
RCV003152611
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Peroxisome biogenesis disorder 8B Likely pathogenic; Pathogenic rs797045062, rs1064794320, rs1590793006, rs397514472, rs2494874800, rs769772100 RCV000191117
RCV003229529
RCV000023293
RCV000023295
RCV000023297
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE ATAXIA DUE TO PEX16 DEFICIENCY Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign; Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Addison Disease Addison`s Disease HPO_DG
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy, Neonatal Adrenoleukodystrophy ORPHANET_DG
★☆☆☆☆
Found in Text Mining only
Atrophy of corpus callosum Atrophy Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 29703930 Associate
★☆☆☆☆
Found in Text Mining only
Congenital Epicanthus Congenital Epicanthus HPO_DG
★☆☆☆☆
Found in Text Mining only
Cryptorchidism Cryptorchidism HPO_DG
★☆☆☆☆
Found in Text Mining only