Gene Gene information from NCBI Gene database.
Entrez ID 94
Gene name Activin A receptor like type 1
Gene symbol ACVRL1
Synonyms (NCBI Gene)
ACVRLK1ALK-1ALK1HHTHHT2ORW2SKR3TSR-I
Chromosome 12
Chromosome location 12q13.13
Summary This gene encodes a type I cell-surface receptor for the TGF-beta superfamily of ligands. It shares with other type I receptors a high degree of similarity in serine-threonine kinase subdomains, a glycine- and serine-rich region (called the GS domain) pre
SNPs SNP information provided by dbSNP.
159
SNP ID Visualize variation Clinical significance Consequence
rs28936399 T>G Pathogenic Missense variant, coding sequence variant
rs28936401 C>A,T Pathogenic, uncertain-significance Missense variant, synonymous variant, coding sequence variant
rs28936687 G>A Pathogenic Missense variant, 5 prime UTR variant, coding sequence variant
rs28936688 G>A,T Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs76038779 C>T Conflicting-interpretations-of-pathogenicity Missense variant, intron variant, 5 prime UTR variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
277
miRTarBase ID miRNA Experiments Reference
MIRT715923 hsa-miR-3127-3p HITS-CLIP 19536157
MIRT715922 hsa-miR-6756-3p HITS-CLIP 19536157
MIRT715921 hsa-miR-5088-3p HITS-CLIP 19536157
MIRT715920 hsa-miR-7110-3p HITS-CLIP 19536157
MIRT715919 hsa-miR-6817-3p HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
SP1 Unknown 20587022
TCF7L2 Unknown 20803090
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
121
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IBA
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IMP 16752392, 32082362
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601284 175 ENSG00000139567
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P37023
Protein name Activin receptor type-1-like (EC 2.7.11.30) (Activin receptor-like kinase 1) (ALK-1) (Serine/threonine-protein kinase receptor R3) (SKR3) (TGF-B superfamily receptor type I) (TSR-I)
Protein function Type I receptor for TGF-beta family ligands BMP9/GDF2 and BMP10 and important regulator of normal blood vessel development. On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinas
PDB 2LCR , 3MY0 , 4FAO , 6SF1 , 6SF2 , 6SF3 , 7PPC
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08515 TGF_beta_GS 173 200 Transforming growth factor beta type I GS-motif Family
PF07714 PK_Tyr_Ser-Thr 202 489 Protein tyrosine and serine/threonine kinase Domain
Sequence
Sequence length 503
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytokine-cytokine receptor interaction   Signaling by BMP
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ACVRL1-related disorder Pathogenic; Likely pathogenic rs2139075900, rs2139084385, rs1555152548, rs863223415, rs863223416, rs28936401, rs2540174684, rs779485996, rs1060503234, rs1060503242, rs1085307405, rs1555153126, rs1555152774, rs1555153828, rs750085854 RCV004550099
RCV004729039
RCV004741168
RCV003235117
RCV004553062
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs2139064475, rs2139067412, rs1555152710, rs1057256890, rs2139074041, rs2139084154, rs2139067969, rs2139074368, rs2139065261, rs2139068677, rs2139084385, rs2139064592, rs1085307418, rs2139070482, rs2139077046
View all (166 more)
RCV002456602
RCV002322366
RCV005540433
RCV002377578
RCV002322371
View all (189 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Clear cell carcinoma of kidney Likely pathogenic rs763785885 RCV005928396
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epistaxis Pathogenic rs863223408 RCV000414952
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal bleeding Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CORONARY ARTERY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
FAMILIAL PRIMARY PULMONARY HYPERTENSION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 24612196
★☆☆☆☆
Found in Text Mining only
Adult Malignant Peripheral Nerve Sheath Tumor Malignant Peripheral Nerve Sheath Tumor BEFREE 12218210
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 27517154
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 26318657
★☆☆☆☆
Found in Text Mining only
Anaplastic Large Cell Lymphoma, ALK-Positive Anaplastic Lymphoma BEFREE 29514107, 31390744
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 31689244
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 32503579, 40205542 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Angioimmunoblastic Lymphadenopathy Angioimmunoblastic T-cell lymphoma BEFREE 19136931
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic Aneurysm BEFREE 31623405
★☆☆☆☆
Found in Text Mining only