Gene Gene information from NCBI Gene database.
Entrez ID 9373
Gene name Phospholipase A2 activating protein
Gene symbol PLAA
Synonyms (NCBI Gene)
DOA1NDMSBAPLA2PPLAP
Chromosome 9
Chromosome location 9p21.2
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs1114167457 G>A Pathogenic Coding sequence variant, non coding transcript variant, genic downstream transcript variant, missense variant
rs1426488816 C>T Likely-pathogenic Genic downstream transcript variant, splice acceptor variant
rs1587143858 C>- Likely-pathogenic Stop gained, non coding transcript variant, coding sequence variant, genic downstream transcript variant
rs1587185107 ->CTA Pathogenic Stop gained, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
90
miRTarBase ID miRNA Experiments Reference
MIRT709328 hsa-miR-4800-3p HITS-CLIP 19536157
MIRT709328 hsa-miR-4800-3p HITS-CLIP 19536157
MIRT709328 hsa-miR-4800-3p HITS-CLIP 19536157
MIRT700756 hsa-miR-552-3p HITS-CLIP 23313552
MIRT700755 hsa-miR-6504-3p HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SP1 Unknown 18291623
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 18775313, 22190034, 25416956, 27753622, 32296183, 35271311, 37776851
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 28007986
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603873 9043 ENSG00000137055
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y263
Protein name Phospholipase A-2-activating protein (PLA2P) (PLAP)
Protein function Plays a role in protein ubiquitination, sorting and degradation through its association with VCP (PubMed:27753622). Involved in ubiquitin-mediated membrane proteins trafficking to late endosomes in an ESCRT-dependent manner, and hence plays a ro
PDB 2K89 , 2K8A , 2K8B , 2K8C , 3EBB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 55 98 WD domain, G-beta repeat Repeat
PF00400 WD40 103 138 WD domain, G-beta repeat Repeat
PF00400 WD40 141 179 WD domain, G-beta repeat Repeat
PF00400 WD40 181 218 WD domain, G-beta repeat Repeat
PF00400 WD40 221 259 WD domain, G-beta repeat Repeat
PF00400 WD40 261 298 WD domain, G-beta repeat Repeat
PF09070 PFU 345 459 PFU (PLAA family ubiquitin binding) Domain
PF08324 PUL 535 789 PUL domain Domain
Sequence
Sequence length 795
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Protein processing in endoplasmic reticulum  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Neurodevelopmental disorder with progressive microcephaly, spasticity, and brain anomalies Likely pathogenic; Pathogenic rs2131392225, rs1241511703, rs2489161312, rs1114167457, rs747956857, rs1554662408, rs1587143858, rs1587185107, rs1587205406, rs1824723269, rs1824935807 RCV001808293
RCV002470549
RCV003214127
RCV000491779
RCV000491007
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hepatocellular carcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Malignant lymphoma, large B-cell, diffuse Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 10571045
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 1420999 Associate
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism Pubtator 30755392 Associate
★☆☆☆☆
Found in Text Mining only
Bulbar palsy Bulbar palsy HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 3325192
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 3325192
★☆☆☆☆
Found in Text Mining only
Cerebellar cortical atrophy Cerebellar cortical atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral cortical atrophy Cerebral cortical atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral Palsy Cerebral palsy Pubtator 40243517 Associate
★☆☆☆☆
Found in Text Mining only