Gene Gene information from NCBI Gene database.
Entrez ID 9361
Gene name Lon peptidase 1, mitochondrial
Gene symbol LONP1
Synonyms (NCBI Gene)
CODASSLONLONPLonHSPIM1PRSS15hLON
Chromosome 19
Chromosome location 19p13.3
Summary This gene encodes a mitochondrial matrix protein that belongs to the Lon family of ATP-dependent proteases. This protein mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides in the mitochondrial matrix. It may a
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs730880293 T>C Pathogenic Genic downstream transcript variant, coding sequence variant, non coding transcript variant, missense variant
rs745742429 C>A,T Likely-pathogenic Stop gained, coding sequence variant, non coding transcript variant, missense variant
rs879255247 G>A Pathogenic Missense variant, coding sequence variant, non coding transcript variant, genic downstream transcript variant
rs879255248 G>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant, genic downstream transcript variant
rs879255249 G>A Pathogenic Missense variant, coding sequence variant, non coding transcript variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
5
miRTarBase ID miRNA Experiments Reference
MIRT029135 hsa-miR-26b-5p Microarray 19088304
MIRT051178 hsa-miR-16-5p CLASH 23622248
MIRT038977 hsa-miR-20a-3p CLASH 23622248
MIRT1114563 hsa-miR-3654 CLIP-seq
MIRT1114564 hsa-miR-558 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
63
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001018 Function Mitochondrial promoter sequence-specific DNA binding IDA 9485316
GO:0001666 Process Response to hypoxia IEA
GO:0001666 Process Response to hypoxia IEP 17418790
GO:0003677 Function DNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605490 9479 ENSG00000196365
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P36776
Protein name Lon protease homolog, mitochondrial (EC 3.4.21.53) (LONHs) (Lon protease-like protein) (LONP) (Mitochondrial ATP-dependent protease Lon) (Serine protease 15)
Protein function ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix (PubMed:12198491, PubMed:15870080,
PDB 2X36 , 6WYS , 6WZV , 6X1M , 6X27 , 7KRZ , 7KSL , 7KSM , 7NFY , 7NG4 , 7NG5 , 7NGC , 7NGF , 7NGL , 7NGP , 7NGQ , 7OXO , 7P09 , 7P0B , 7P0M , 8OJL , 8OKA , 8OM7 , 8OVF , 8OVG , 9CC0 , 9CC3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02190 LON_substr_bdg 123 368 ATP-dependent protease La (LON) substrate-binding domain Family
PF00004 AAA 519 661 ATPase family associated with various cellular activities (AAA) Domain
PF05362 Lon_C 736 949 Lon protease (S16) C-terminal proteolytic domain Domain
Tissue specificity TISSUE SPECIFICITY: Duodenum, heart, lung and liver, but not thymus. {ECO:0000269|PubMed:8248235}.
Sequence
MAASTGYVRLWGAARCWVLRRPMLAAAGGRVPTAAGAWLLRGQRTCDASPPWALWGRGPA
IGGQWRGFWEASSRGGGAFSGGEDASEGGAEEGAGGAGGSAGAGEGPVITALTPMTIPDV
FPHLPLIAITRNPVFPRFIKIIEVKNKKLVELLRRKVRLAQPYVGVFLKRDDSNESDVVE
SLDEIYHTGTFAQIHEMQDLGDKLRMIVMGHRRVHISRQLEVEPEEPEAENKHKPRRKSK
RGKKEAEDELSARHPAELAMEPTPELPAEVLMVEVENVVHEDFQVTEEVKALTAEIVKTI
RDIIALNPLYRESVLQMMQAGQRVVDNPIYLSDMGAALTGAESHELQDVLEETNIPKRLY
KALSLLKK
EFELSKLQQRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEK
FRERLKELVVPKHVMDVVDEELSKLGLLDNHSSEFNVTRNYLDWLTSIPWGKYSNENLDL
ARAQAVLEEDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARAL
NREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQ
GDPSSALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVTDTIPEPLRDRMEMINVSG
Y
VAQEKLAIAERYLVPQARALCGLDESKAKLSSDVLTLLIKQYCRESGVRNLQKQVEKVL
RKSAYKIVSGEAESVEVTPENLQDFVGKPVFTVERMYDVTPPGVVMGLAWTAMGGSTLFV
ETSLRRPQDKDAKGDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHI
HLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTI
AAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPD
EQAEALAVER
Sequence length 959
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CODAS syndrome Pathogenic; Likely pathogenic rs730880293, rs879255248, rs879255249, rs1599439595 RCV000157620
RCV000157622
RCV000157623
RCV001027666
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
LONP1-related disorder Pathogenic; Likely pathogenic rs2512386646, rs2512415167, rs2512409407 RCV003388195
RCV003388196
RCV004528645
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL CATARACT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DIAPHRAGMATIC HERNIA Disgenet, GWAS catalog
Disgenet, GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acidosis Lactic Lactic acidosis Pubtator 29518248 Associate
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 31072293
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 24009772
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 21802138
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18708761
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer UNIPROT_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30583073
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma BEFREE 29467592
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 30038898
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 24009772
★☆☆☆☆
Found in Text Mining only