Gene Gene information from NCBI Gene database.
Entrez ID 9342
Gene name Synaptosome associated protein 29
Gene symbol SNAP29
Synonyms (NCBI Gene)
CEDNIKSNAP-29
Chromosome 22
Chromosome location 22q11.21
Summary This gene, a member of the SNAP25 gene family, encodes a protein involved in multiple membrane trafficking steps. Two other members of this gene family, SNAP23 and SNAP25, encode proteins that bind a syntaxin protein and mediate synaptic vesicle membrane
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs387907363 ->A Pathogenic Frameshift variant, coding sequence variant
rs751575036 ->G Uncertain-significance, pathogenic Frameshift variant, coding sequence variant
rs1064795236 G>C,T Likely-pathogenic Coding sequence variant, stop gained, missense variant
rs1315355162 C>A,T Pathogenic Coding sequence variant, missense variant, stop gained
miRNA miRNA information provided by mirtarbase database.
549
miRTarBase ID miRNA Experiments Reference
MIRT001499 hsa-miR-155-5p pSILAC 18668040
MIRT001499 hsa-miR-155-5p Proteomics;Other 18668040
MIRT025633 hsa-miR-7-5p Microarray 19073608
MIRT041037 hsa-miR-505-3p CLASH 23622248
MIRT696964 hsa-miR-122-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
GO:0000421 Component Autophagosome membrane IEA
GO:0005484 Function SNAP receptor activity IBA
GO:0005484 Function SNAP receptor activity TAS 10839363
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604202 11133 ENSG00000099940
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95721
Protein name Synaptosomal-associated protein 29 (SNAP-29) (Soluble 29 kDa NSF attachment protein) (Vesicle-membrane fusion protein SNAP-29)
Protein function SNAREs, soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes. SNAREs localized on opposing membranes assemble to form a trans-SNARE complex, an extended, parallel four al
PDB 4WY4 , 7BV6
Family and domains
Tissue specificity TISSUE SPECIFICITY: Found in brain, heart, kidney, liver, lung, placenta, skeletal muscle, spleen and pancreas. {ECO:0000269|PubMed:9852078}.
Sequence
MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAAST
SRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLV
NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGA
GSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTK
VDKLDVNIKSTERKVRQL
Sequence length 258
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  SNARE interactions in vesicular transport
Autophagy - animal
  Neutrophil degranulation
Intra-Golgi traffic
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
8
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CEDNIK syndrome Likely pathogenic; Pathogenic rs775445020, rs869312906, rs886041240, rs751575036, rs1928559435, rs1064795236, rs387907363 RCV001806375
RCV000210470
RCV002251740
RCV000778648
RCV005030218
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hypomyelinating leukodystrophy 2 Likely pathogenic; Pathogenic rs886041240, rs751575036 RCV000454300
RCV000454232
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CEREBRAL DYSGENESIS, NEUROPATHY, ICHTHYOSIS, AND PALMOPLANTAR KERATODERMA SYNDROME CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LEUKODYSTROPHY, HYPOMYELINATING, 2 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LIVER CIRRHOSIS, EXPERIMENTAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ORAL CAVITY CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Atrial Fibrillation Atrial fibrillation Pubtator 36226239 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 31500805 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 30555541
★☆☆☆☆
Found in Text Mining only
CEDNIK syndrome CEDNIK Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cerebral dysgenesis neuropathy ichthyosis and palmoplantar keratoderma syndrome Cerebral dysgenesis-neuropathy-ichthyosis-palmoplantar keratoderma syndrome Pubtator 15968592, 23231787 Associate
★☆☆☆☆
Found in Text Mining only
Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome CEDNIK Syndrome ORPHANET_DG 15968592, 21073448
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome CEDNIK Syndrome GENOMICS_ENGLAND_DG 15968592, 21073448, 25958742
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome CEDNIK Syndrome BEFREE 21073448, 29454964, 30718891, 30793783, 31748968
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome CEDNIK Syndrome CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome CEDNIK Syndrome CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations