Gene Gene information from NCBI Gene database.
Entrez ID 9325
Gene name Thyroid hormone receptor interactor 4
Gene symbol TRIP4
Synonyms (NCBI Gene)
ASC-1ASC1HsT17391MDCDCSMABF1ZC2HC5
Chromosome 15
Chromosome location 15q22.31
Summary This gene encodes a subunit of the tetrameric nuclear activating signal cointegrator 1 (ASC-1) complex, which associates with transcriptional coactivators, nuclear receptors and basal transcription factors to facilitate nuclear receptors-mediated transcri
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs147303485 C>T Likely-pathogenic Stop gained, non coding transcript variant, coding sequence variant
rs200549601 G>A Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs760447338 CATA>-,CATACATA Likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
rs761865592 C>T Pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs869312827 C>A,T Pathogenic Synonymous variant, stop gained, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
482
miRTarBase ID miRNA Experiments Reference
MIRT719627 hsa-miR-4728-3p HITS-CLIP 19536157
MIRT719626 hsa-miR-1537-5p HITS-CLIP 19536157
MIRT719625 hsa-miR-4718 HITS-CLIP 19536157
MIRT719624 hsa-miR-4999-5p HITS-CLIP 19536157
MIRT461191 hsa-miR-6768-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0002020 Function Protease binding IPI 25219498
GO:0003713 Function Transcription coactivator activity IMP 25219498
GO:0005515 Function Protein binding IPI 25219498
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 10454579, 12077347, 25219498, 26924529
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604501 12310 ENSG00000103671
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15650
Protein name Activating signal cointegrator 1 (ASC-1) (Thyroid receptor-interacting protein 4) (TR-interacting protein 4) (TRIP-4)
Protein function Transcription coactivator which associates with nuclear receptors, transcriptional coactivators including EP300, CREBBP and NCOA1, and basal transcription factors like TBP and TFIIA to facilitate nuclear receptors-mediated transcription (PubMed:
PDB 2E5O , 8ALZ , 8YEW , 8YEY , 8YFI , 8YFJ , 8YXW , 8YXX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06221 zf-C2HC5 168 216 Putative zinc finger motif, C2HC5-type Domain
PF04266 ASCH 437 551 ASCH domain Domain
Sequence
MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDIL
QRDSNKSQKLLKKLMSGVENSGKV
DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
CKNPQEMVVKF
PIKGNPKIWKLDSKIHQGAKKGLMKQNKAV
Sequence length 581
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Centronuclear myopathy Pathogenic rs2505390122, rs2505448975 RCV004587612
RCV004587613
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cervical cancer Likely pathogenic rs374032892 RCV005931138
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital muscular dystrophy-respiratory failure-skin abnormalities-joint hyperlaxity syndrome Pathogenic rs748828135, rs200549601 RCV005002857
RCV000239524
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Gastric cancer Likely pathogenic rs374032892 RCV005931139
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MUSCULAR DYSTROPHY, RESPIRATORY FAILURE, SKIN ABNORMALITIES, JOINT HYPERLAXITY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease Alzheimer disease Pubtator 24495969 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alzheimer`s Disease Alzheimer disease GWASCAT_DG 24162737
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASDB_DG 24162737
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 31794073 Associate
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 25219498, 9597010
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 40180167 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 40765826 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 31794073
★☆☆☆☆
Found in Text Mining only