Gene Gene information from NCBI Gene database.
Entrez ID 92211
Gene name Cadherin related family member 1
Gene symbol CDHR1
Synonyms (NCBI Gene)
CORD15PCDH21PRCADRP65
Chromosome 10
Chromosome location 10q23.1
Summary This gene belongs to the cadherin superfamily of calcium-dependent cell adhesion molecules. The encoded protein is a photoreceptor-specific cadherin that plays a role in outer segment disc morphogenesis. Mutations in this gene are associated with inherite
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs137876961 A>G Benign-likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, downstream transcript variant, coding sequence variant
rs141787212 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Synonymous variant, coding sequence variant
rs146588811 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs147346345 G>A,C,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-pathogenic Coding sequence variant, missense variant, synonymous variant
rs150969538 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, genic downstream transcript variant, intron variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
67
miRTarBase ID miRNA Experiments Reference
MIRT048768 hsa-miR-93-5p CLASH 23622248
MIRT879968 hsa-miR-103a CLIP-seq
MIRT879969 hsa-miR-107 CLIP-seq
MIRT879970 hsa-miR-146a CLIP-seq
MIRT879971 hsa-miR-146b-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
15
GO ID Ontology Definition Evidence Reference
GO:0005509 Function Calcium ion binding IEA
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
GO:0007155 Process Cell adhesion IBA
GO:0007155 Process Cell adhesion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609502 14550 ENSG00000148600
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96JP9
Protein name Cadherin-related family member 1 (Photoreceptor cadherin) (prCAD) (Protocadherin-21)
Protein function Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells (By similarity).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 40 125 Cadherin domain Domain
PF00028 Cadherin 140 237 Cadherin domain Domain
PF00028 Cadherin 251 344 Cadherin domain Domain
PF00028 Cadherin 477 567 Cadherin domain Domain
PF00028 Cadherin 581 677 Cadherin domain Domain
Sequence
MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGT
DPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDREREDEIEAIISISDGLNLVAEK
VVILV
TDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAVDRDTGSGGSVTYFLQNLHSP
FAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTVTVNVE
DVQ
DMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGNDGAFEINETSG
AISITQSPAQLQREVYELHVQVTEMSPAGSPAAQATVPVTIRIV
DLNNHPPTFYGESGPQ
NRFELSMNEHPPQGEILRGLKITVNDSDQGANAKFNLQLVGPRGIFRVVPQTVLNEAQVT
IIVENSAAIDFEKSKVLTFKLLAVEVNTPEKFSSTADVVIQLLDTNDNVPKFDSLYYVAR
IPENAPGGSSVVAVTAVDPDTGPWGEVKYSTYGTGADLFLIHPSTGLIYTQPWASLDAEA
TARYNFYVKAEDMEGKYSVAEVFITLL
DVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDA
EEPNNLVDYSITHAEPANVFDINSHTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKD
RGSPSFSTTALLKIDIT
DAETLSRSPMAAFLIQTKDNPMKAVGVLAGTMATVVAITVLIS
TATFWRNKKSNKVLPMRRVLRKRPSPAPRTIRIEWLKSKSTKAATKFMLKEKPPNENCNN
NSPESSLLPRAPALPPPPSVAPSTGAAQWTVPTVSGSLTPQPTQPPPKPKTMGSPVQSTL
ISELKQKFEKKSVHNKAYF
Sequence length 859
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
26
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CDHR1-related disorder Likely pathogenic; Pathogenic rs750895925, rs547198427 RCV003399208
RCV003393836
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone dystrophy Likely pathogenic; Pathogenic rs794727197 RCV000626977
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone-rod dystrophy Likely pathogenic; Pathogenic rs142980820, rs1589306127, rs767366723 RCV004017867
RCV002267755
RCV002267756
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone-rod dystrophy 15 Pathogenic; Likely pathogenic rs373978786, rs2132782773, rs1842216995, rs751972593, rs1346965647, rs1842385241, rs794727197, rs886041900, rs2492497251, rs781781440, rs756678484, rs1589307705, rs767366723, rs373412516, rs1183979115 RCV001591909
RCV001591910
RCV002227535
RCV005232754
RCV005863512
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONE ROD DYSTROPHY Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Age related macular degeneration Age-related macular degeneration BEFREE 18654668
★☆☆☆☆
Found in Text Mining only
Atrophoderma maculatum Anetoderma BEFREE 28885867, 31387115
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 35627310 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Central areolar choroidal sclerosis Central Areolar Choroidal Sclerosis BEFREE 31387115
★☆☆☆☆
Found in Text Mining only
Conductive hearing loss Hearing Loss HPO_DG
★☆☆☆☆
Found in Text Mining only
Cone Dystrophy Cone dystrophy Pubtator 26957898, 28765526 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone Dystrophy Cone Dystrophy BEFREE 28765526
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone rod dystrophy Cone-rod dystrophy Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cone-Rod Dystrophies Cone-rod dystrophy BEFREE 20805371, 23233793, 24265541
★★☆☆☆
Found in Text Mining + Unknown/Other Associations