Gene Gene information from NCBI Gene database.
Entrez ID 91624
Gene name Nexilin F-actin binding protein
Gene symbol NEXN
Synonyms (NCBI Gene)
CDM2MCMH20NELIN
Chromosome 1
Chromosome location 1p31.1
Summary This gene encodes a filamentous actin-binding protein that may function in cell adhesion and migration. Mutations in this gene have been associated with dilated cardiomyopathy, also known as CMD1CC. Alternatively spliced transcript variants have been desc
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs137853197 A>G Likely-pathogenic, pathogenic, uncertain-significance Missense variant, coding sequence variant
rs137853198 C>A Pathogenic Missense variant, coding sequence variant
rs200753280 C>G Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Missense variant, coding sequence variant
rs201019553 T>G Benign, conflicting-interpretations-of-pathogenicity Intron variant
rs372532824 G>A,C Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
48
miRTarBase ID miRNA Experiments Reference
MIRT1181370 hsa-miR-1244 CLIP-seq
MIRT1181371 hsa-miR-1253 CLIP-seq
MIRT1181372 hsa-miR-3163 CLIP-seq
MIRT1181373 hsa-miR-3180-5p CLIP-seq
MIRT1181374 hsa-miR-3185 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0003779 Function Actin binding IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005737 Component Cytoplasm IEA
GO:0005856 Component Cytoskeleton IEA
GO:0005886 Component Plasma membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613121 29557 ENSG00000162614
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q0ZGT2
Protein name Nexilin (F-actin-binding protein) (Nelin)
Protein function Involved in regulating cell migration through association with the actin cytoskeleton. Has an essential role in the maintenance of Z line and sarcomere integrity. {ECO:0000269|PubMed:12053183, ECO:0000269|PubMed:15823560, ECO:0000269|PubMed:1988
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 582 671 Immunoglobulin I-set domain Domain
Tissue specificity TISSUE SPECIFICITY: Abundantly expressed in heart and skeletal muscle, and at lower levels in placenta, lung, liver and pancreas. Also expressed in HeLaS3 and MOLT-4 cell lines. {ECO:0000269|PubMed:12053183, ECO:0000269|PubMed:15823560, ECO:0000269|PubMed
Sequence
MNDISQKAEILLSSSKPVPKTYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQ
YIREREWNRRKQEIKEMLASDDEEDVSSKVEKAYVPKLTGTVKGRFAEMEKQRQEEQRKR
TEEERKRRIEQDMLEKRKIQRELAKRAEQIEDINNTGTESASEEGDDSLLITVVPVKSYK
TSGKMKKNFEDLEKEREEKERIKYEEDKRIRYEEQRPSLKEAKCLSLVMDDEIESEAKKE
SLSPGKLKLTFEELERQRQENRKKQAEEEARKRLEEEKRAFEEARRQMVNEDEENQDTAK
IFKGYRPGKLKLSFEEMERQRREDEKRKAEEEARRRIEEEKKAFAEARRNMVVDDDSPEM
YKTISQEFLTPGKLEINFEELLKQKMEEEKRRTEEERKHKLEMEKQEFEQLRQEMGEEEE
ENETFGLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEIQKKIEEERARRRAIDLE
IKEREAENFHEEDDVDVRPARKSEAPFTHKVNMKARFEQMAKAREEEEQRRIEEQKLLRM
QFEQREIDAALQKKREEEEEEEGSIMNGSTAEDEEQTRSGAPWFKKPLKNTSVVDSEPVR
FTVKVTGEPKPEITWWFEGEILQDGEDYQYIERGETYCLYLPETFPEDGGEYMCKAVNNK
GSAASTCILTI
ESKN
Sequence length 675
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
46
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Dilated cardiomyopathy 1CC Likely pathogenic; Pathogenic rs747902604, rs2102146999, rs2102147202, rs761030548, rs2523247994, rs2526788988, rs2523207851, rs2523206492, rs2523301351, rs779386334, rs2523223119, rs1361285566, rs2526786866, rs2523301824, rs2523208987
View all (2 more)
RCV001317526
RCV001897348
RCV001983393
RCV003075494
RCV002814634
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Heart failure Likely pathogenic; Pathogenic rs747902604 RCV005235562
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypertrophic cardiomyopathy 20 Likely pathogenic; Pathogenic rs747902604, rs2102146999, rs2102147202, rs761030548, rs2523247994, rs2526788988, rs2523207851, rs2523206492, rs2523301351, rs779386334, rs2523223119, rs1361285566, rs2526786866, rs2523301824, rs2523208987
View all (3 more)
RCV001317526
RCV001897348
RCV001983393
RCV003075494
RCV002814634
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal cardiac test Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arrhythmogenic right ventricular dysplasia 9 Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA, FAMILIAL, 9 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arteriosclerosis Arteriosclerosis BEFREE 30589415, 31830726
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 26458985, 39801217 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 30589415, 31830726
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect BEFREE 24866383
★☆☆☆☆
Found in Text Mining only
Cardiomegaly Cardiomegaly Pubtator 35166435 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 19843512, 24866383, 30982350
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy Pubtator 38059363 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy GENOMICS_ENGLAND_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 31983221, 32041989, 35166435, 36129056, 38059363 Associate
★☆☆☆☆
Found in Text Mining only