CDY1 (chromodomain Y-linked 1)

Gene

• Entrez ID: 9085
• Gene name: Chromodomain Y-linked 1
• Gene symbol: CDY1
• Synonyms (NCBI Gene): CDY, CDY1A
• Chromosome: Y
• Chromosome location: Yq11.23
• Summary: This gene encodes a protein containing a chromodomain and a histone acetyltransferase catalytic domain. Chromodomain proteins are components of heterochromatin-like complexes and can act as gene repressors. This protein is localized to the nucleus of late

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT882842	hsa-miR-1303	CLIP-seq
MIRT882843	hsa-miR-142-5p	CLIP-seq
MIRT882844	hsa-miR-561	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003714	Function	Transcription corepressor activity	IBA
GO:0004402	Function	Histone acetyltransferase activity	IEA
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	18450745
GO:0005634	Component	Nucleus	IEA
GO:0006325	Process	Chromatin organization	IEA
GO:0006338	Process	Chromatin remodeling	IEA
GO:0007283	Process	Spermatogenesis	IEA
GO:0007283	Process	Spermatogenesis	TAS	9381176
GO:0016740	Function	Transferase activity	IEA
GO:0016746	Function	Acyltransferase activity	IEA
GO:0045892	Process	Negative regulation of DNA-templated transcription	IEA
GO:0061628	Function	Histone H3K27me3 reader activity	IDA	18450745
GO:0061733	Function	Protein-lysine-acetyltransferase activity	IEA
GO:0062072	Function	Histone H3K9me2/3 reader activity	IDA	18450745

Other IDs

• MIM: 400016
• HGNC: 1809
• e!Ensembl: ENSG00000172288

Interactions View interactions

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Evidence Score
SPERMATOGENIC FAILURE, NONOBSTRUCTIVE, Y-LINKED	—	CTD	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SPERMATOGENIC FAILURE, Y-LINKED, 2	—	ClinVar, HPO ClinVar, HPO	★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Associations from Text Mining
Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Azoospermia	Azoospermia	BEFREE	11163833, 18326516, 26149076		★☆☆☆☆ Found in Text Mining only
Azoospermia	Azoospermia	Pubtator	11163833, 16491273, 26149076	Associate	★☆☆☆☆ Found in Text Mining only
Azoospermia	Azoospermia	HPO_DG			★☆☆☆☆ Found in Text Mining only
Infertility	Infertility	Pubtator	15520406	Associate	★☆☆☆☆ Found in Text Mining only
Infertility Male	Male infertility	Pubtator	15520406, 26149076	Associate	★☆☆☆☆ Found in Text Mining only
Malignant neoplasm of prostate	Prostate cancer	BEFREE	11743352		★☆☆☆☆ Found in Text Mining only
Multiple Myeloma	Multiple myeloma	BEFREE	23475625		★☆☆☆☆ Found in Text Mining only
Multiple Myeloma	Multiple myeloma	Pubtator	23475625	Associate	★☆☆☆☆ Found in Text Mining only
Oligospermia	Oligospermia	BEFREE	11263480, 18326516, 26149076		★☆☆☆☆ Found in Text Mining only
Prostate carcinoma	Prostate cancer	BEFREE	11743352		★☆☆☆☆ Found in Text Mining only
Spermatogenic Failure, Nonobstructive, Y-Linked	Nonobstructive Spermatogenic Failure, Y-Linked	CTD_human_DG			★★☆☆☆ Found in Text Mining + Unknown/Other Associations