CCDC97 (coiled-coil domain containing 97)

Gene

• Entrez ID: 90324
• Gene name: Coiled-coil domain containing 97
• Gene symbol: CCDC97
• Synonyms (NCBI Gene): -
• Chromosome: 19
• Chromosome location: 19q13.2

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT051643	hsa-let-7e-5p	CLASH	23622248
MIRT042047	hsa-miR-484	CLASH	23622248
MIRT870690	hsa-miR-1207-3p	CLIP-seq
MIRT870691	hsa-miR-122	CLIP-seq
MIRT870692	hsa-miR-124	CLIP-seq
MIRT870693	hsa-miR-1245b-5p	CLIP-seq
MIRT870694	hsa-miR-1254	CLIP-seq
MIRT870695	hsa-miR-1291	CLIP-seq
MIRT870696	hsa-miR-1324	CLIP-seq
MIRT870697	hsa-miR-136	CLIP-seq
MIRT870698	hsa-miR-143	CLIP-seq
MIRT870699	hsa-miR-1827	CLIP-seq
MIRT870700	hsa-miR-185	CLIP-seq
MIRT870701	hsa-miR-1914	CLIP-seq
MIRT870702	hsa-miR-2110	CLIP-seq
MIRT870703	hsa-miR-22	CLIP-seq
MIRT870704	hsa-miR-30a	CLIP-seq
MIRT870705	hsa-miR-30b	CLIP-seq
MIRT870706	hsa-miR-30c	CLIP-seq
MIRT870707	hsa-miR-30d	CLIP-seq
MIRT870708	hsa-miR-30e	CLIP-seq
MIRT870709	hsa-miR-3116	CLIP-seq
MIRT870710	hsa-miR-3120-5p	CLIP-seq
MIRT870711	hsa-miR-3123	CLIP-seq
MIRT870712	hsa-miR-3125	CLIP-seq
MIRT870713	hsa-miR-3126-5p	CLIP-seq
MIRT870714	hsa-miR-3142	CLIP-seq
MIRT870715	hsa-miR-3147	CLIP-seq
MIRT870716	hsa-miR-3150a-3p	CLIP-seq
MIRT870717	hsa-miR-3173-5p	CLIP-seq
MIRT870718	hsa-miR-3175	CLIP-seq
MIRT870719	hsa-miR-3202	CLIP-seq
MIRT870720	hsa-miR-3661	CLIP-seq
MIRT870721	hsa-miR-3675-5p	CLIP-seq
MIRT870722	hsa-miR-3714	CLIP-seq
MIRT870723	hsa-miR-3910	CLIP-seq
MIRT870724	hsa-miR-3916	CLIP-seq
MIRT870725	hsa-miR-3925-5p	CLIP-seq
MIRT870726	hsa-miR-3929	CLIP-seq
MIRT870727	hsa-miR-4260	CLIP-seq
MIRT870728	hsa-miR-4306	CLIP-seq
MIRT870729	hsa-miR-4311	CLIP-seq
MIRT870730	hsa-miR-4312	CLIP-seq
MIRT870731	hsa-miR-4419a	CLIP-seq
MIRT870732	hsa-miR-4419b	CLIP-seq
MIRT870733	hsa-miR-4420	CLIP-seq
MIRT870734	hsa-miR-4421	CLIP-seq
MIRT870735	hsa-miR-4425	CLIP-seq
MIRT870736	hsa-miR-4450	CLIP-seq
MIRT870737	hsa-miR-4468	CLIP-seq
MIRT870738	hsa-miR-4476	CLIP-seq
MIRT870739	hsa-miR-4478	CLIP-seq
MIRT870740	hsa-miR-4510	CLIP-seq
MIRT870741	hsa-miR-4644	CLIP-seq
MIRT870742	hsa-miR-4650-5p	CLIP-seq
MIRT870743	hsa-miR-4690-5p	CLIP-seq
MIRT870744	hsa-miR-4695-3p	CLIP-seq
MIRT870745	hsa-miR-4716-3p	CLIP-seq
MIRT870746	hsa-miR-4722-5p	CLIP-seq
MIRT870747	hsa-miR-4723-5p	CLIP-seq
MIRT870748	hsa-miR-4746-3p	CLIP-seq
MIRT870749	hsa-miR-4768-3p	CLIP-seq
MIRT870750	hsa-miR-4770	CLIP-seq
MIRT870751	hsa-miR-486-3p	CLIP-seq
MIRT870752	hsa-miR-506	CLIP-seq
MIRT870753	hsa-miR-579	CLIP-seq
MIRT870754	hsa-miR-631	CLIP-seq
MIRT870755	hsa-miR-658	CLIP-seq
MIRT870756	hsa-miR-661	CLIP-seq
MIRT870757	hsa-miR-711	CLIP-seq
MIRT870758	hsa-miR-933	CLIP-seq
MIRT870759	hsa-miR-939	CLIP-seq
MIRT870760	hsa-miR-940	CLIP-seq
MIRT1958517	hsa-miR-1207-5p	CLIP-seq
MIRT870691	hsa-miR-122	CLIP-seq
MIRT870693	hsa-miR-1245b-5p	CLIP-seq
MIRT1958518	hsa-miR-1275	CLIP-seq
MIRT870695	hsa-miR-1291	CLIP-seq
MIRT1958519	hsa-miR-1304	CLIP-seq
MIRT870696	hsa-miR-1324	CLIP-seq
MIRT1958520	hsa-miR-140-5p	CLIP-seq
MIRT870698	hsa-miR-143	CLIP-seq
MIRT1958521	hsa-miR-147	CLIP-seq
MIRT870699	hsa-miR-1827	CLIP-seq
MIRT870700	hsa-miR-185	CLIP-seq
MIRT870701	hsa-miR-1914	CLIP-seq
MIRT1958522	hsa-miR-205	CLIP-seq
MIRT1958523	hsa-miR-2052	CLIP-seq
MIRT870702	hsa-miR-2110	CLIP-seq
MIRT1958524	hsa-miR-2467-5p	CLIP-seq
MIRT1958525	hsa-miR-296-5p	CLIP-seq
MIRT1958526	hsa-miR-3064-5p	CLIP-seq
MIRT1958527	hsa-miR-3121-5p	CLIP-seq
MIRT1958528	hsa-miR-3124-3p	CLIP-seq
MIRT870713	hsa-miR-3126-5p	CLIP-seq
MIRT870714	hsa-miR-3142	CLIP-seq
MIRT870716	hsa-miR-3150a-3p	CLIP-seq
MIRT1958529	hsa-miR-3155	CLIP-seq
MIRT1958530	hsa-miR-3155b	CLIP-seq
MIRT1958531	hsa-miR-3173-3p	CLIP-seq
MIRT870717	hsa-miR-3173-5p	CLIP-seq
MIRT870718	hsa-miR-3175	CLIP-seq
MIRT1958532	hsa-miR-3180-5p	CLIP-seq
MIRT1958533	hsa-miR-3187-3p	CLIP-seq
MIRT1958534	hsa-miR-3189-3p	CLIP-seq
MIRT870719	hsa-miR-3202	CLIP-seq
MIRT1958535	hsa-miR-346	CLIP-seq
MIRT1958536	hsa-miR-3545-5p	CLIP-seq
MIRT1958537	hsa-miR-3612	CLIP-seq
MIRT1958538	hsa-miR-3622a-3p	CLIP-seq
MIRT1958539	hsa-miR-3622b-3p	CLIP-seq
MIRT1958540	hsa-miR-3659	CLIP-seq
MIRT1958541	hsa-miR-3921	CLIP-seq
MIRT870727	hsa-miR-4260	CLIP-seq
MIRT1958542	hsa-miR-4283	CLIP-seq
MIRT1958543	hsa-miR-4288	CLIP-seq
MIRT870728	hsa-miR-4306	CLIP-seq
MIRT1958544	hsa-miR-4324	CLIP-seq
MIRT1958545	hsa-miR-4328	CLIP-seq
MIRT870731	hsa-miR-4419a	CLIP-seq
MIRT1958546	hsa-miR-4435	CLIP-seq
MIRT1958547	hsa-miR-4447	CLIP-seq
MIRT1958548	hsa-miR-4472	CLIP-seq
MIRT1958549	hsa-miR-4480	CLIP-seq
MIRT870740	hsa-miR-4510	CLIP-seq
MIRT1958550	hsa-miR-4525	CLIP-seq
MIRT870741	hsa-miR-4644	CLIP-seq
MIRT1958551	hsa-miR-4645-5p	CLIP-seq
MIRT870742	hsa-miR-4650-5p	CLIP-seq
MIRT1958552	hsa-miR-4653-5p	CLIP-seq
MIRT1958553	hsa-miR-4658	CLIP-seq
MIRT1958554	hsa-miR-4665-5p	CLIP-seq
MIRT1958555	hsa-miR-4668-5p	CLIP-seq
MIRT1958556	hsa-miR-4673	CLIP-seq
MIRT1958557	hsa-miR-4682	CLIP-seq
MIRT1958558	hsa-miR-4695-5p	CLIP-seq
MIRT1958559	hsa-miR-4701-5p	CLIP-seq
MIRT1958560	hsa-miR-4711-3p	CLIP-seq
MIRT870745	hsa-miR-4716-3p	CLIP-seq
MIRT870746	hsa-miR-4722-5p	CLIP-seq
MIRT870747	hsa-miR-4723-5p	CLIP-seq
MIRT1958561	hsa-miR-4731-5p	CLIP-seq
MIRT1958562	hsa-miR-4747-5p	CLIP-seq
MIRT1958563	hsa-miR-4763-3p	CLIP-seq
MIRT870749	hsa-miR-4768-3p	CLIP-seq
MIRT870750	hsa-miR-4770	CLIP-seq
MIRT1958564	hsa-miR-4794	CLIP-seq
MIRT870751	hsa-miR-486-3p	CLIP-seq
MIRT1958565	hsa-miR-5096	CLIP-seq
MIRT1958566	hsa-miR-510	CLIP-seq
MIRT1958567	hsa-miR-512-5p	CLIP-seq
MIRT1958568	hsa-miR-539	CLIP-seq
MIRT1958569	hsa-miR-548s	CLIP-seq
MIRT1958570	hsa-miR-574-5p	CLIP-seq
MIRT870753	hsa-miR-579	CLIP-seq
MIRT1958571	hsa-miR-588	CLIP-seq
MIRT1958572	hsa-miR-625	CLIP-seq
MIRT1958573	hsa-miR-632	CLIP-seq
MIRT1958574	hsa-miR-635	CLIP-seq
MIRT1958575	hsa-miR-637	CLIP-seq
MIRT1958576	hsa-miR-645	CLIP-seq
MIRT1958577	hsa-miR-650	CLIP-seq
MIRT1958578	hsa-miR-758	CLIP-seq
MIRT1958579	hsa-miR-760	CLIP-seq
MIRT870759	hsa-miR-939	CLIP-seq
MIRT870760	hsa-miR-940	CLIP-seq
MIRT870691	hsa-miR-122	CLIP-seq
MIRT2195326	hsa-miR-1226	CLIP-seq
MIRT870694	hsa-miR-1254	CLIP-seq
MIRT2195327	hsa-miR-1273g	CLIP-seq
MIRT1958519	hsa-miR-1304	CLIP-seq
MIRT870696	hsa-miR-1324	CLIP-seq
MIRT2195328	hsa-miR-138	CLIP-seq
MIRT1958520	hsa-miR-140-5p	CLIP-seq
MIRT870698	hsa-miR-143	CLIP-seq
MIRT2195329	hsa-miR-146b-3p	CLIP-seq
MIRT1958521	hsa-miR-147	CLIP-seq
MIRT2195330	hsa-miR-149	CLIP-seq
MIRT2195331	hsa-miR-1538	CLIP-seq
MIRT2195332	hsa-miR-15a	CLIP-seq
MIRT2195333	hsa-miR-15b	CLIP-seq
MIRT2195334	hsa-miR-16	CLIP-seq
MIRT870699	hsa-miR-1827	CLIP-seq
MIRT870700	hsa-miR-185	CLIP-seq
MIRT870701	hsa-miR-1914	CLIP-seq
MIRT2195335	hsa-miR-195	CLIP-seq
MIRT870702	hsa-miR-2110	CLIP-seq
MIRT2195336	hsa-miR-2467-3p	CLIP-seq
MIRT2195337	hsa-miR-2964a-5p	CLIP-seq
MIRT1958526	hsa-miR-3064-5p	CLIP-seq
MIRT870704	hsa-miR-30a	CLIP-seq
MIRT870705	hsa-miR-30b	CLIP-seq
MIRT870706	hsa-miR-30c	CLIP-seq
MIRT870707	hsa-miR-30d	CLIP-seq
MIRT870708	hsa-miR-30e	CLIP-seq
MIRT870709	hsa-miR-3116	CLIP-seq
MIRT870711	hsa-miR-3123	CLIP-seq
MIRT2195338	hsa-miR-3126-3p	CLIP-seq
MIRT870713	hsa-miR-3126-5p	CLIP-seq
MIRT870715	hsa-miR-3147	CLIP-seq
MIRT870716	hsa-miR-3150a-3p	CLIP-seq
MIRT2195339	hsa-miR-3151	CLIP-seq
MIRT870717	hsa-miR-3173-5p	CLIP-seq
MIRT870718	hsa-miR-3175	CLIP-seq
MIRT2195340	hsa-miR-3188	CLIP-seq
MIRT1958537	hsa-miR-3612	CLIP-seq
MIRT1958538	hsa-miR-3622a-3p	CLIP-seq
MIRT1958539	hsa-miR-3622b-3p	CLIP-seq
MIRT870725	hsa-miR-3925-5p	CLIP-seq
MIRT2195341	hsa-miR-3937	CLIP-seq
MIRT2195342	hsa-miR-424	CLIP-seq
MIRT870727	hsa-miR-4260	CLIP-seq
MIRT870728	hsa-miR-4306	CLIP-seq
MIRT1958544	hsa-miR-4324	CLIP-seq
MIRT870731	hsa-miR-4419a	CLIP-seq
MIRT2195343	hsa-miR-4456	CLIP-seq
MIRT2195344	hsa-miR-4464	CLIP-seq
MIRT870738	hsa-miR-4476	CLIP-seq
MIRT1958549	hsa-miR-4480	CLIP-seq
MIRT2195345	hsa-miR-4492	CLIP-seq
MIRT2195346	hsa-miR-4498	CLIP-seq
MIRT870740	hsa-miR-4510	CLIP-seq
MIRT2195347	hsa-miR-4524	CLIP-seq
MIRT2195348	hsa-miR-4529-5p	CLIP-seq
MIRT870741	hsa-miR-4644	CLIP-seq
MIRT870746	hsa-miR-4722-5p	CLIP-seq
MIRT1958561	hsa-miR-4731-5p	CLIP-seq
MIRT2195349	hsa-miR-4733-3p	CLIP-seq
MIRT2195350	hsa-miR-4745-3p	CLIP-seq
MIRT2195351	hsa-miR-4747-3p	CLIP-seq
MIRT2195352	hsa-miR-4748	CLIP-seq
MIRT870749	hsa-miR-4768-3p	CLIP-seq
MIRT870750	hsa-miR-4770	CLIP-seq
MIRT2195353	hsa-miR-4783-3p	CLIP-seq
MIRT1958564	hsa-miR-4794	CLIP-seq
MIRT870751	hsa-miR-486-3p	CLIP-seq
MIRT2195354	hsa-miR-497	CLIP-seq
MIRT2195355	hsa-miR-503	CLIP-seq
MIRT1958568	hsa-miR-539	CLIP-seq
MIRT2195356	hsa-miR-541	CLIP-seq
MIRT2195357	hsa-miR-646	CLIP-seq
MIRT1958577	hsa-miR-650	CLIP-seq
MIRT2195358	hsa-miR-654-5p	CLIP-seq
MIRT1958578	hsa-miR-758	CLIP-seq
MIRT2195359	hsa-miR-762	CLIP-seq
MIRT2195360	hsa-miR-874	CLIP-seq
MIRT870758	hsa-miR-933	CLIP-seq
MIRT870759	hsa-miR-939	CLIP-seq
MIRT870760	hsa-miR-940	CLIP-seq
MIRT1958517	hsa-miR-1207-5p	CLIP-seq
MIRT870698	hsa-miR-143	CLIP-seq
MIRT870699	hsa-miR-1827	CLIP-seq
MIRT870700	hsa-miR-185	CLIP-seq
MIRT2195336	hsa-miR-2467-3p	CLIP-seq
MIRT1958542	hsa-miR-4283	CLIP-seq
MIRT870728	hsa-miR-4306	CLIP-seq
MIRT870741	hsa-miR-4644	CLIP-seq
MIRT2385688	hsa-miR-4656	CLIP-seq
MIRT870746	hsa-miR-4722-5p	CLIP-seq
MIRT1958561	hsa-miR-4731-5p	CLIP-seq
MIRT1958563	hsa-miR-4763-3p	CLIP-seq
MIRT870749	hsa-miR-4768-3p	CLIP-seq
MIRT870750	hsa-miR-4770	CLIP-seq
MIRT1958568	hsa-miR-539	CLIP-seq
MIRT870760	hsa-miR-940	CLIP-seq
MIRT2498614	hsa-miR-1233	CLIP-seq
MIRT2498615	hsa-miR-1258	CLIP-seq
MIRT2498616	hsa-miR-129-3p	CLIP-seq
MIRT2498617	hsa-miR-1295	CLIP-seq
MIRT870696	hsa-miR-1324	CLIP-seq
MIRT2498618	hsa-miR-1343	CLIP-seq
MIRT1958520	hsa-miR-140-5p	CLIP-seq
MIRT870716	hsa-miR-3150a-3p	CLIP-seq
MIRT870718	hsa-miR-3175	CLIP-seq
MIRT1958538	hsa-miR-3622a-3p	CLIP-seq
MIRT1958539	hsa-miR-3622b-3p	CLIP-seq
MIRT1958544	hsa-miR-4324	CLIP-seq
MIRT1958549	hsa-miR-4480	CLIP-seq
MIRT2498619	hsa-miR-4667-5p	CLIP-seq
MIRT2498620	hsa-miR-4700-5p	CLIP-seq
MIRT2498621	hsa-miR-4707-3p	CLIP-seq
MIRT2195351	hsa-miR-4747-3p	CLIP-seq
MIRT2498622	hsa-miR-640	CLIP-seq
MIRT870756	hsa-miR-661	CLIP-seq
MIRT870759	hsa-miR-939	CLIP-seq
MIRT2677516	hsa-miR-1224-5p	CLIP-seq
MIRT2498614	hsa-miR-1233	CLIP-seq
MIRT2677517	hsa-miR-1247	CLIP-seq
MIRT2498615	hsa-miR-1258	CLIP-seq
MIRT2498616	hsa-miR-129-3p	CLIP-seq
MIRT2498617	hsa-miR-1295	CLIP-seq
MIRT2498618	hsa-miR-1343	CLIP-seq
MIRT870716	hsa-miR-3150a-3p	CLIP-seq
MIRT870718	hsa-miR-3175	CLIP-seq
MIRT2677518	hsa-miR-371-5p	CLIP-seq
MIRT2677519	hsa-miR-371b-5p	CLIP-seq
MIRT2677520	hsa-miR-4649-3p	CLIP-seq
MIRT2498619	hsa-miR-4667-5p	CLIP-seq
MIRT2498620	hsa-miR-4700-5p	CLIP-seq
MIRT2498621	hsa-miR-4707-3p	CLIP-seq
MIRT2677521	hsa-miR-4725-5p	CLIP-seq
MIRT2195351	hsa-miR-4747-3p	CLIP-seq
MIRT2677522	hsa-miR-4751	CLIP-seq
MIRT2677523	hsa-miR-504	CLIP-seq
MIRT2677524	hsa-miR-513c	CLIP-seq
MIRT2677525	hsa-miR-514b-5p	CLIP-seq
MIRT2498622	hsa-miR-640	CLIP-seq
MIRT870756	hsa-miR-661	CLIP-seq
MIRT870759	hsa-miR-939	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005634	Component	Nucleus	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q96F63
• Protein name: Coiled-coil domain-containing protein 97
• Protein function: May play a role pre-mRNA splicing through the association with the splicing factor SF3B complex which is involved in branch-site recognition.
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF09747	DUF2052	156 → 330	Coiled-coil domain containing protein (DUF2052)	Coiled-coil

• Sequence:

  MEAVATATAAKEPDKGCIEPGPGHWGELSRTPVPSKPQDKVEAAEATPVALDSDTSGAEN
  AAVSAMLHAVAASRLPVCSQQQGEPDLTEHEKVAILAQLYHEKPLVFLERFRTGLREEHL
  ACFGHVRGDHRADFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFR
  APLLYEQYIGQYLTQEELSARTPTHQPPKPGSPGRPACPLSNLLLQSYEERELQQRLLQQ
  QEEEEACLEEEEEEEDSDEEDQRSGKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGD
  FDYSTVDDNPDFDNLDIVARDEEERYFDEEEPEDAPSPELDGD

• Sequence length: 343

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Evidence Score
CARDIOVASCULAR DISEASE	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
CORONARY ARTERY DISEASE	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
CORONARY ATHEROSCLEROSIS	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
HEART DISEASE	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
IGA GLOMERULONEPHRITIS	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MYOCARDIAL INFARCTION	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MYOCARDIAL ISCHEMIA	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Associations from Text Mining
Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Coronary Artery Disease	Coronary artery disease	Pubtator	27386823	Associate	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Coronary Artery Disease	Coronary artery disease	GWASCAT_DG	29212778		★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Emphysema	Emphysema	Pubtator	18670143, 23734748	Associate	★☆☆☆☆ Found in Text Mining only
Glomerulonephritis IGA	Iga nephropathy	Pubtator	19258388	Associate	★☆☆☆☆ Found in Text Mining only
Pulmonary Disease Chronic Obstructive	Chronic obstructive pulmonary disease	Pubtator	16780585, 18670143, 23267696	Associate	★☆☆☆☆ Found in Text Mining only