Gene Gene information from NCBI Gene database.
Entrez ID 8905
Gene name Adaptor related protein complex 1 subunit sigma 2
Gene symbol AP1S2
Synonyms (NCBI Gene)
DC22MRX59MRXS21MRXS5MRXSFPGSSIGMA1B
Chromosome X
Chromosome location Xp22.2
Summary Adaptor protein complex 1 is found at the cytoplasmic face of coated vesicles located at the Golgi complex, where it mediates both the recruitment of clathrin to the membrane and the recognition of sorting signals within the cytosolic tails of transmembra
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs104894735 G>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs104894739 G>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs137852213 C>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs587776738 TGTA>- Pathogenic Splice acceptor variant, intron variant
rs587776739 C>T Pathogenic Intron variant
miRNA miRNA information provided by mirtarbase database.
74
miRTarBase ID miRNA Experiments Reference
MIRT005816 hsa-miR-204-5p Luciferase reporter assayMicroarrayqRT-PCR 21282569
MIRT024614 hsa-miR-215-5p Microarray 19074876
MIRT026570 hsa-miR-192-5p Microarray 19074876
MIRT054445 hsa-miR-211-5p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 24039954
MIRT054445 hsa-miR-211-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
29
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0005515 Function Protein binding IPI 25416956, 26496610, 28514442, 29892012, 32296183, 33961781
GO:0005737 Component Cytoplasm IEA
GO:0005765 Component Lysosomal membrane NAS 23247405
GO:0005765 Component Lysosomal membrane TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300629 560 ENSG00000182287
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P56377
Protein name AP-1 complex subunit sigma-2 (Adaptor protein complex AP-1 subunit sigma-1B) (Adaptor-related protein complex 1 subunit sigma-1B) (Clathrin assembly protein complex 1 sigma-1B small chain) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Sigma 1B subunit
Protein function Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognitio
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01217 Clat_adaptor_s 1 141 Clathrin adaptor complex small chain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed.
Sequence
Sequence length 157
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Lysosome
Human immunodeficiency virus 1 infection
  Nef mediated downregulation of MHC class I complex cell surface expression
MHC class II antigen presentation
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Fried syndrome Pathogenic rs1555904878 RCV001824840
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Pettigrew syndrome Pathogenic; Likely pathogenic rs587777542, rs2519915767, rs2519929822, rs2519914292, rs104894739, rs104894735, rs587776738, rs587776739, rs137852213, rs2519914351, rs1060499672, rs1555904182, rs1555904878, rs1934288587, rs1933972061
View all (1 more)
RCV000128636
RCV003149130
RCV003153171
RCV004798977
RCV000011524
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Thyroid cancer, nonmedullary, 1 Pathogenic rs1934209113 RCV005910799
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AP1S2-related disorder Uncertain significance; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aicardi Goutieres syndrome Aicardi goutieres syndrome Pubtator 17617514 Associate
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 18428203
★☆☆☆☆
Found in Text Mining only
Azoospermia Nonobstructive Nonobstructive azoospermia Pubtator 38403804 Associate
★☆☆☆☆
Found in Text Mining only
Basal Ganglia Diseases Basal ganglia disease Pubtator 23756445 Associate
★☆☆☆☆
Found in Text Mining only
Body Weight Body weight Pubtator 35178801 Stimulate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 31019021
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 31019021 Associate
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral cortical atrophy Cerebral cortical atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only