Gene Gene information from NCBI Gene database.
Entrez ID 8842
Gene name Prominin 1
Gene symbol PROM1
Synonyms (NCBI Gene)
AC133CD133CORD12MCDR2MSTP061PROML1RP41STGD4
Chromosome 4
Chromosome location 4p15.32
Summary This gene encodes a pentaspan transmembrane glycoprotein. The protein localizes to membrane protrusions and is often expressed on adult stem cells, where it is thought to function in maintaining stem cell properties by suppressing differentiation. Mutatio
SNPs SNP information provided by dbSNP.
36
SNP ID Visualize variation Clinical significance Consequence
rs137853005 G>A,T Pathogenic Stop gained, coding sequence variant, missense variant
rs137853006 G>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant
rs137853907 G>T Pathogenic Stop gained, coding sequence variant
rs185335345 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs201644238 G>A,T Likely-pathogenic Coding sequence variant, stop gained, synonymous variant
miRNA miRNA information provided by mirtarbase database.
91
miRTarBase ID miRNA Experiments Reference
MIRT021645 hsa-miR-142-3p Reporter assay 21394831
MIRT021645 hsa-miR-142-3p Luciferase reporter assayWestern blot 23619912
MIRT622607 hsa-miR-3156-5p HITS-CLIP 23824327
MIRT622606 hsa-miR-7110-3p HITS-CLIP 23824327
MIRT622605 hsa-miR-6817-3p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
DNMT1 Unknown 20196115
HOXB4 Unknown 15735039
MYC Unknown 22945648
SP1 Unknown 22945648
SRY Unknown 21947321
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001750 Component Photoreceptor outer segment ISS
GO:0005515 Function Protein binding IPI 18654668, 23084749, 24556617
GO:0005615 Component Extracellular space HDA 16502470
GO:0005783 Component Endoplasmic reticulum IDA 24556617
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604365 9454 ENSG00000007062
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43490
Protein name Prominin-1 (Antigen AC133) (Prominin-like protein 1) (CD antigen CD133)
Protein function May play a role in cell differentiation, proliferation and apoptosis (PubMed:24556617). Binds cholesterol in cholesterol-containing plasma membrane microdomains and may play a role in the organization of the apical plasma membrane in epithelial
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05478 Prominin 18 820 Prominin Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is selectively expressed on CD34 hematopoietic stem and progenitor cells in adult and fetal bone marrow, fetal liver, cord blood and adult peripheral blood. Isoform 1 is not detected on other blood cells. Isoform 1 is also ex
Sequence
MALVLGSLLLLGLCGNSFSGGQPSSTDAPKAWNYELPATNYETQDSHKAGPIGILFELVH
IFLYVVQPRDFPEDTLRKFLQKAYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFI
ILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVAN
HQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQYNTTKDKAFTDLNSINSVLGGG
ILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRS
SLNDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQG
YQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRLPIQDILSAFSVYVNNTESYI
HRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGG
VFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEY
YLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELES
LKVNLNIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANS
LPPGNLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASL
DFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVD
VFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYR
RMDSEDVYDDVETIPMKNME
NGNNGYHKDHVYGIHNPVMTSPSQH
Sequence length 865
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Transcriptional misregulation in cancer  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
50
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive retinitis pigmentosa Likely pathogenic; Pathogenic rs543698823, rs768303070, rs137853907 RCV001257789
RCV001257790
RCV001257888
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone-rod dystrophy Pathogenic; Likely pathogenic rs886037880, rs886037881, rs1296826479, rs1553901823, rs775957498, rs373680665, rs1355802816, rs1719285721, rs368213921 RCV002267733
RCV002267734
RCV003324707
RCV001199726
RCV001199727
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cone-rod dystrophy 12 Likely pathogenic; Pathogenic rs1333833629, rs1733212554, rs1324631413, rs137853907, rs2475275702, rs137853006, rs878853400, rs886037880, rs886037881, rs2475104632, rs373680665, rs543698823, rs766246531, rs373331232, rs1210104601
View all (7 more)
RCV001352997
RCV001353023
RCV005253830
RCV002288584
RCV002289076
View all (17 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cone-rod dystrophy 2 Likely pathogenic; Pathogenic rs543698823, rs1726238223 RCV001255712
RCV001255713
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Uncertain significance; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMAUROSIS CONGENITA OF LEBER, TYPE 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BRAIN ANEURYSM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, TRANSITIONAL CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Kidney Tubular Necrosis Renal tubular necrosis BEFREE 27871857
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 18702870, 23532815
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 11314021, 23532815, 27461622, 29113211
★☆☆☆☆
Found in Text Mining only
Acute myeloid leukemia with multilineage dysplasia Myeloid Leukemia With Multilineage Dysplasia BEFREE 15345284
★☆☆☆☆
Found in Text Mining only
Adamantinous Craniopharyngioma Adamantinous Craniopharyngioma BEFREE 24356780
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 18754869, 20179163, 20303649, 20844808, 20872808, 20937222, 22142828, 24484648, 25625240, 27435662, 27920206, 28216140, 29790189, 30900377
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18754869
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 31059103
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 27069317
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 20193109, 25015560, 30061254
★☆☆☆☆
Found in Text Mining only