Gene Gene information from NCBI Gene database.
Entrez ID 8726
Gene name Embryonic ectoderm development
Gene symbol EED
Synonyms (NCBI Gene)
COGISHEEDWAIT1
Chromosome 11
Chromosome location 11q14.2
Summary This gene encodes a member of the Polycomb-group (PcG) family. PcG family members form multimeric protein complexes, which are involved in maintaining the transcriptional repressive state of genes over successive cell generations. This protein interacts w
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs1131692173 A>C,G Pathogenic Intron variant, synonymous variant, non coding transcript variant, missense variant, coding sequence variant
rs1131692174 C>T Pathogenic Non coding transcript variant, intron variant, coding sequence variant, missense variant
rs1131692175 A>G Pathogenic Non coding transcript variant, intron variant, coding sequence variant, missense variant
rs1131692176 G>C Pathogenic Non coding transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
86
miRTarBase ID miRNA Experiments Reference
MIRT004086 hsa-miR-101-3p Western blot 19008416
MIRT021689 hsa-miR-138-5p Western blot;qRT-PCR 21770894
MIRT029750 hsa-miR-26b-5p Microarray 19088304
MIRT048018 hsa-miR-30c-5p CLASH 23622248
MIRT718468 hsa-miR-483-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0001222 Function Transcription corepressor binding IPI 29628311
GO:0001739 Component Sex chromatin IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605984 3188 ENSG00000074266
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75530
Protein name Polycomb protein EED (hEED) (Embryonic ectoderm development protein) (WD protein associating with integrin cytoplasmic tails 1) (WAIT-1)
Protein function Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. Also recognizes 'Lys-26' trimethylated histone H1 with
PDB 3IIW , 3IIY , 3IJ0 , 3IJ1 , 3IJC , 3JPX , 3JZG , 3JZH , 3JZN , 3K26 , 3K27 , 4W2R , 4X3E , 5GSA , 5H13 , 5H14 , 5H15 , 5H17 , 5H19 , 5H24 , 5H25 , 5HYN , 5IJ7 , 5IJ8 , 5K0M , 5LS6 , 5TTW , 5U5H , 5U5K , 5U5T , 5U62 , 5U69 , 5U6D , 5U8A , 5U8F , 5WG6 , 5WP3 , 5WUK , 6B3W , 6C23 , 6C24 , 6LO2 , 6SFB , 6SFC , 6U4Y , 6V3X , 6V3Y , 6W7F , 6W7G , 6WKR , 6YVI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 180 219 WD domain, G-beta repeat Repeat
PF00400 WD40 225 264 WD domain, G-beta repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, colon, heart, kidney, liver, lung, muscle, ovary, peripheral blood leukocytes, pancreas, placenta, prostate, spleen, small intestine, testis, thymus and uterus. Appears to be overexpressed in breast and colon cancer
Sequence
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN
IQTDTLVAIFGGVEGHRDEVL
SADYDLLGEKIMSCGMDHSLKLWR
INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
DSSILIAVCDDASIWRWDRLR
Sequence length 441
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Polycomb repressive complex   PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
PKMTs methylate histone lysines
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6
HCMV Early Events
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autism spectrum disorder Likely pathogenic rs2495862536 RCV003127305
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cohen-Gibson syndrome Likely pathogenic; Pathogenic rs1945710855, rs2495876442, rs1131692173, rs1131692174, rs1131692175, rs1131692176, rs1565706229, rs1593776227 RCV002273048
RCV003757717
RCV000495739
RCV000494950
RCV000495365
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Neurodevelopmental delay Likely pathogenic rs2138241608 RCV002274336
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adrenocortical carcinoma, hereditary Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CANNABIS DEPENDENCE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 28387316
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 30291346
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 36635771 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 36969166 Associate
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 23251464
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 23251464 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Cholangiocarcinoma Cholangiocarcinoma Pubtator 24089088 Associate
★☆☆☆☆
Found in Text Mining only
Cholangiocarcinoma Cholangiocarcinoma BEFREE 31126817
★☆☆☆☆
Found in Text Mining only