Gene Gene information from NCBI Gene database.
Entrez ID 8674
Gene name Vesicle associated membrane protein 4
Gene symbol VAMP4
Synonyms (NCBI Gene)
VAMP-4VAMP24
Chromosome 1
Chromosome location 1q24.3
Summary Synaptobrevins/VAMPs, syntaxins, and the 25-kD synaptosomal-associated protein SNAP25 are the main components of a protein complex involved in the docking and/or fusion of synaptic vesicles with the presynaptic membrane. The protein encoded by this gene i
miRNA miRNA information provided by mirtarbase database.
341
miRTarBase ID miRNA Experiments Reference
MIRT504870 hsa-miR-4789-3p HITS-CLIP 21572407
MIRT504869 hsa-miR-4643 HITS-CLIP 21572407
MIRT504868 hsa-miR-5011-5p HITS-CLIP 21572407
MIRT504867 hsa-miR-466 HITS-CLIP 21572407
MIRT504866 hsa-miR-4789-5p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
36
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS 9553086
GO:0005515 Function Protein binding IPI 16189514, 19557002, 25416956, 25419848, 26359495, 28514442, 28626000, 32296183, 32814053, 33961781
GO:0005764 Component Lysosome TAS 9553086
GO:0005768 Component Endosome IEA
GO:0005768 Component Endosome TAS 9553086
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606909 12645 ENSG00000117533
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75379
Protein name Vesicle-associated membrane protein 4 (VAMP-4)
Protein function Involved in the pathway that functions to remove an inhibitor (probably synaptotagmin-4) of calcium-triggered exocytosis during the maturation of secretory granules. May be a marker for this sorting pathway that is critical for remodeling the se
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00957 Synaptobrevin 49 137 Synaptobrevin Family
Sequence
Sequence length 141
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  SNARE interactions in vesicular transport   Retrograde transport at the Trans-Golgi-Network
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
1
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
PARKINSON DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 28901494 Associate
★☆☆☆☆
Found in Text Mining only
Diabetes Diabetes BEFREE 15896658
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus Diabetes Mellitus BEFREE 15896658
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus, Non-Insulin-Dependent Diabetes Mellitus BEFREE 15896658
★☆☆☆☆
Found in Text Mining only