Gene Gene information from NCBI Gene database.
Entrez ID 8651
Gene name Suppressor of cytokine signaling 1
Gene symbol SOCS1
Synonyms (NCBI Gene)
AISIMDCIS1CISH1JABSOCS-1SSI-1SSI1TIP-3TIP3
Chromosome 16
Chromosome location 16p13.13
Summary This gene encodes a member of the STAT-induced STAT inhibitor (SSI), also known as suppressor of cytokine signaling (SOCS), family. SSI family members are cytokine-inducible negative regulators of cytokine signaling. The expression of this gene can be ind
miRNA miRNA information provided by mirtarbase database.
251
miRTarBase ID miRNA Experiments Reference
MIRT004336 hsa-miR-19b-3p Luciferase reporter assayWestern blot 18728182
MIRT004337 hsa-miR-19a-3p Luciferase reporter assayWestern blot 18728182
MIRT000456 hsa-miR-155-5p qRT-PCRLuciferase reporter assayWestern blot 20354188
MIRT004337 hsa-miR-19a-3p Luciferase reporter assay 18728182
MIRT004336 hsa-miR-19b-3p Luciferase reporter assay 18728182
Transcription factors Transcription factors information provided by TRRUST V2 database.
7
Transcription factor Regulation Reference
GLI1 Activation 24058673
GLI2 Activation 24058673
HIF1A Activation 20003295
IRF1 Activation 20644166
SP1 Activation 20644166
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0001817 Process Regulation of cytokine production IEA
GO:0004860 Function Protein kinase inhibitor activity TAS 9202125
GO:0005126 Function Cytokine receptor binding IBA
GO:0005159 Function Insulin-like growth factor receptor binding IPI 9727029
GO:0005515 Function Protein binding IPI 16273093, 16643902, 17183367, 18172216, 23401859, 31980649, 32296183, 35512704
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603597 19383 ENSG00000185338
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O15524
Protein name Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) (Tec-interacting protein 3) (TIP-3)
Protein function Essential negative regulator of type I and type II interferon (IFN) signaling, as well as that of other cytokines, including IL2, IL4, IL6 and leukemia inhibitory factor (LIF) (PubMed:32499645, PubMed:33087723). Downregulates cytokine signaling
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00017 SH2 79 154 SH2 domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues with high expression in spleen, small intestine and peripheral blood leukocytes.
Sequence
MVAHNQVAADNAVSTAAEPRRRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRS
HADYRRITRASALLDACGFYWGPLSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMA
SGPTSIRVHFQAGRFHLDGSRESFDCLFELLEHY
VAAPRRMLGAPLRQRRVRPLQELCRQ
RIVATVGRENLARIPLNPVLRDYLSSFPFQI
Sequence length 211
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ubiquitin mediated proteolysis
Osteoclast differentiation
JAK-STAT signaling pathway
Insulin signaling pathway
Prolactin signaling pathway
Type II diabetes mellitus
Growth hormone synthesis, secretion and action
Toxoplasmosis
MicroRNAs in cancer
  Interleukin-7 signaling
MyD88:MAL(TIRAP) cascade initiated on plasma membrane
Interleukin-4 and Interleukin-13 signaling
Interferon gamma signaling
Regulation of IFNG signaling
Interferon alpha/beta signaling
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
26
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autoimmune hemolytic anemia Pathogenic rs1470306246, rs2069587477 RCV001254899
RCV001254898
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autoimmune thrombocytopenia Pathogenic rs1470306246, rs2069587477 RCV001254899
RCV001254898
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autoimmune thrombocytopenic purpura Pathogenic rs1244284678 RCV001254897
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autoinflammatory syndrome with immunodeficiency Likely pathogenic; Pathogenic rs2141125120, rs2141124542, rs2141124327, rs2069579242, rs1470306246, rs1244284678, rs2069587477 RCV001526868
RCV001526867
RCV003388891
RCV003991985
RCV004719119
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATOPIC ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASE GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOINFLAMMATORY SYNDROME, FAMILIAL, WITH OR WITHOUT IMMUNODEFICIENCY Disgenet, HPO
Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Coronary Syndrome Coronary Syndrome BEFREE 24997329
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 14762685, 29415891
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 14762685
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 29937734
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 12865927, 17376806, 24726456
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 25853848
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 28302137, 31407320
★☆☆☆☆
Found in Text Mining only
Adult Hodgkin Lymphoma Hodgkin Lymphoma BEFREE 16532038, 17652621, 19734449
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 24058673
★☆☆☆☆
Found in Text Mining only
Adult T-Cell Lymphoma/Leukemia T-Cell Lymphoma/Leukemia LHGDN 14630083
★☆☆☆☆
Found in Text Mining only