Gene Gene information from NCBI Gene database.
Entrez ID 8626
Gene name Tumor protein p63
Gene symbol TP63
Synonyms (NCBI Gene)
AISB(p51A)B(p51B)EEC3KETLMSNBPOFC8RHSSHFM4TP53CPTP53LTP73Lp40p51p53CPp63p73Hp73L
Chromosome 3
Chromosome location 3q28
Summary This gene encodes a member of the p53 family of transcription factors. The functional domains of p53 family proteins include an N-terminal transactivation domain, a central DNA-binding domain and an oligomerization domain. Alternative splicing of this gen
SNPs SNP information provided by dbSNP.
60
SNP ID Visualize variation Clinical significance Consequence
rs61732782 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs113993963 A>C Pathogenic Missense variant, intron variant, coding sequence variant
rs113993964 C>- Pathogenic Frameshift variant, coding sequence variant, genic downstream transcript variant, 3 prime UTR variant
rs113993965 G>A,T Pathogenic Missense variant, intron variant, coding sequence variant
rs113993966 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
172
miRTarBase ID miRNA Experiments Reference
MIRT004281 hsa-miR-92a-3p Luciferase reporter assayqRT-PCRWestern blot 19608627
MIRT004248 hsa-miR-203a-3p qRT-PCRWestern blot 18483491
MIRT004248 hsa-miR-203a-3p Luciferase reporter assay 18483491
MIRT005329 hsa-miR-21-5p Luciferase reporter assayqRT-PCRWestern blot 18829576
MIRT004248 hsa-miR-203a-3p Luciferase reporter assay 18311128
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
BRCA1 Unknown 16241993
HDAC2 Unknown 21317427
SATB2 Repression 21965674
STAT3 Activation 18198175
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
118
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin IDA 22521434
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603273 15979 ENSG00000073282
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H3D4
Protein name Tumor protein 63 (p63) (Chronic ulcerative stomatitis protein) (CUSP) (Keratinocyte transcription factor KET) (Transformation-related protein 63) (TP63) (Tumor protein p73-like) (p73L) (p40) (p51)
Protein function Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and auto-regulating transactivation inhibiting domains thus showing an isoform specific activity. Isoform 2 act
PDB 1RG6 , 2NB1 , 2RMN , 2Y9T , 2Y9U , 3QYM , 3QYN , 3US0 , 3US1 , 3US2 , 3ZY0 , 3ZY1 , 4A9Z , 6FGN , 6RU6 , 6RU7 , 6RU8 , 7Z71 , 7Z72 , 7Z73 , 7Z7E , 8P9C , 8P9D , 8P9E , 9GFO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00870 P53 167 359 P53 DNA-binding domain Domain
PF07710 P53_tetramer 391 431 P53 tetramerisation motif Motif
PF07647 SAM_2 541 605 SAM domain (Sterile alpha motif) Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed, notably in heart, kidney, placenta, prostate, skeletal muscle, testis and thymus, although the precise isoform varies according to tissue type. Progenitor cell layers of skin, breast, eye and prostate express high lev
Sequence
MNFETSRCATLQYCPDPYIQRFVETPAHFSWKESYYRSTMSQSTQTNEFLSPEVFQHIWD
FLEQPICSVQPIDLNFVDEPSEDGATNKIEISMDCIRMQDSDLSDPMWPQYTNLGLLNSM
DQQIQNGSSSTSPYNTDHAQNSVTAPSPYAQPSSTFDALSPSPAIPSNTDYPGPHSFDVS
FQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEV
VKRCPNHELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFT
TVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSI
R
KQQVSDSTKNGDGTKRPFRQNTHGIQMTSIKKRRSPDDELLYLPVRGRETYEMLLKIKES
LELMQYLPQHT
IETYRQQQQQQHQHLLQKQTSIQSPSSYGNSSPPLNKMNSMNKLPSVSQ
LINPQQRNALTPTTIPDGMGANIPMMGTHMPMAGDMNGLSPTQALPPPLSMPSTSHCTPP
PPYPTDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKG
ILDHR
QLHEFSSPSHLLRTPSSASTVSVGSSETRGERVIDAVRFTLRQTISFPPRDEWND
FNFDMDARRNKQQRIKEEGE
Sequence length 680
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  MicroRNAs in cancer   Activation of PUMA and translocation to mitochondria
TP53 Regulates Metabolic Genes
TP53 Regulates Transcription of Genes Involved in Cytochrome C Release
TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain
TP53 Regulates Transcription of Caspase Activators and Caspases
TP53 Regulates Transcription of Death Receptors and Ligands
Regulation of TP53 Activity through Association with Co-factors
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
82
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ADULT syndrome Likely pathogenic; Pathogenic rs2108864735, rs113993963, rs113993967, rs113993966, rs121908849 RCV003136064
RCV000006911
RCV000006914
RCV000006923
RCV000006926
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ankyloblepharon-ectodermal defects-cleft lip/palate syndrome Pathogenic; Likely pathogenic rs864621968, rs121908842, rs121908843, rs121908845, rs2474724873 RCV005208129
RCV000006909
RCV000006910
RCV000006918
RCV001794436
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Auditory neuropathy Likely pathogenic rs2474589841 RCV003484464
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3 Likely pathogenic; Pathogenic rs2108804508, rs1404019220, rs864621968, rs797044484, rs121908835, rs121908836, rs121908837, rs2108864810, rs121908839, rs121908840, rs121908841, rs121908844, rs121908849, rs2474609100, rs886041251
View all (4 more)
RCV005638161
RCV001849646
RCV000206266
RCV000190455
RCV000006900
View all (15 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANKYLOBLEPHARON FILIFORME ADNATUM AND CLEFT PALATE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ankyloblepharon filiforme adnatum-cleft palate syndrome Uncertain significance ClinVar
Orphanet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ANKYLOBLEPHARON-ECTODERMAL DEFECTS-CLEFT LIP/PALATE HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BLADDER EXSTROPHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
2-3 toe syndactyly Syndactyly Of The Toes HPO_DG
★☆☆☆☆
Found in Text Mining only
3-4 finger cutaneous syndactyly Syndactyly of fingers HPO_DG
★☆☆☆☆
Found in Text Mining only
Accessory nipple Accessory Nipple HPO_DG
★☆☆☆☆
Found in Text Mining only
Achondroplasia Achondroplasia BEFREE 23408600
★☆☆☆☆
Found in Text Mining only
Acquired porencephaly Acquired Porencephaly BEFREE 16061602
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 24481878
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 11727253, 14562279, 14612504, 15551738, 16575619, 16884378, 20332665, 22071786, 22935826, 24166777, 24194854, 24879567, 25189640, 25982011, 26003479
View all (18 more)
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 15389254, 15551738, 16575619, 16804722, 18432259
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma CTD_human_DG 20871597
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 11727253
★☆☆☆☆
Found in Text Mining only