Gene Gene information from NCBI Gene database.
Entrez ID 8482
Gene name Semaphorin 7A (JohnMiltonHagen blood group)
Gene symbol SEMA7A
Synonyms (NCBI Gene)
CD108CDw108H-SEMA-K1H-Sema-LJMHPFIC11SEMAK1SEMAL
Chromosome 15
Chromosome location 15q24.1
Summary This gene encodes a member of the semaphorin family of proteins. The encoded preproprotein is proteolytically processed to generate the mature glycosylphosphatidylinositol (GPI)-anchored membrane glycoprotein. The encoded protein is found on activated lym
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs55637216 C>T Affects Missense variant, coding sequence variant
rs56367230 G>A,C Affects Missense variant, coding sequence variant
rs387907241 C>A,T Affects Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
191
miRTarBase ID miRNA Experiments Reference
MIRT040303 hsa-miR-615-3p CLASH 23622248
MIRT437947 hsa-miR-27a-3p ChIP-seqqRT-PCRLuciferase reporter assayWestern blot 24725595
MIRT437947 hsa-miR-27a-3p ChIP-seqqRT-PCRLuciferase reporter assayWestern blot 24725595
MIRT437947 hsa-miR-27a-3p ChIP-seqqRT-PCRLuciferase reporter assayWestern blot 24725595
MIRT437947 hsa-miR-27a-3p ChIP-seqqRT-PCRLuciferase reporter assayWestern blot 24725595
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0001649 Process Osteoblast differentiation HDA 16210410
GO:0001755 Process Neural crest cell migration IBA
GO:0005178 Function Integrin binding IBA
GO:0005178 Function Integrin binding IEA
GO:0005515 Function Protein binding IPI 17474147, 20727575
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607961 10741 ENSG00000138623
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75326
Protein name Semaphorin-7A (CDw108) (JMH blood group antigen) (John-Milton-Hargen human blood group Ag) (Semaphorin-K1) (Sema K1) (Semaphorin-L) (Sema L) (CD antigen CD108)
Protein function Plays an important role in integrin-mediated signaling and functions both in regulating cell migration and immune responses. Promotes formation of focal adhesion complexes, activation of the protein kinase PTK2/FAK1 and subsequent phosphorylatio
PDB 3NVQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01403 Sema 77 472 Sema domain Family
PF01437 PSI 492 550 Plexin repeat Family
PF13895 Ig_2 545 628 Immunoglobulin domain Domain
Tissue specificity TISSUE SPECIFICITY: Detected in skin keratinocytes and on endothelial cells from skin blood vessels (at protein level). Expressed in fibroblasts, keratinocytes, melanocytes, placenta, testis, ovary, spleen, brain, spinal cord, lung, heart, adrenal gland,
Sequence
Sequence length 666
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Axon guidance   Other semaphorin interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cholestasis, progressive familial intrahepatic, 11 Pathogenic rs200895370 RCV002248475
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Uncertain significance; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30568033
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 29269512, 30555351, 30729666
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis Pubtator 31394943 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 16778393 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 24333536, 38022556 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 29269512, 30555351, 30729666
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 31990411 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 29048670, 30254150
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 35955933 Associate
★☆☆☆☆
Found in Text Mining only
Cerebrovascular accident Stroke BEFREE 30729666
★☆☆☆☆
Found in Text Mining only