Gene Gene information from NCBI Gene database.
Entrez ID 84695
Gene name Lysyl oxidase like 3
Gene symbol LOXL3
Synonyms (NCBI Gene)
LOXLMYP28
Chromosome 2
Chromosome location 2p13.1
Summary This gene encodes a lysyl oxidase, which likely functions as an amine oxidase and plays a role in the formation of crosslinks in collagens and elastin. Deletion of the related gene in mouse causes neonatal mortality with cleft palate, spine deformity, and
miRNA miRNA information provided by mirtarbase database.
174
miRTarBase ID miRNA Experiments Reference
MIRT1115386 hsa-miR-2113 CLIP-seq
MIRT1115387 hsa-miR-2467-3p CLIP-seq
MIRT1115388 hsa-miR-323-5p CLIP-seq
MIRT1115389 hsa-miR-34a CLIP-seq
MIRT1115390 hsa-miR-34c-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
48
GO ID Ontology Definition Evidence Reference
GO:0001837 Process Epithelial to mesenchymal transition IDA 16096638
GO:0001968 Function Fibronectin binding IEA
GO:0001968 Function Fibronectin binding ISS
GO:0004720 Function Protein-lysine 6-oxidase activity IBA
GO:0004720 Function Protein-lysine 6-oxidase activity IDA 28065600
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607163 13869 ENSG00000115318
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P58215
Protein name Lysyl oxidase homolog 3 (EC 1.4.3.-) (EC 1.4.3.13) (Lysyl oxidase-like protein 3)
Protein function Protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins (PubMed:17018530, PubMed:28065600). Catalyzes the post-translational oxidative deamination of peptidyl lysine residues in precursors
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00530 SRCR 50 145 Scavenger receptor cysteine-rich domain Domain
PF00530 SRCR 181 282 Scavenger receptor cysteine-rich domain Domain
PF00530 SRCR 310 407 Scavenger receptor cysteine-rich domain Domain
PF00530 SRCR 420 525 Scavenger receptor cysteine-rich domain Domain
PF01186 Lysyl_oxidase 529 729 Lysyl oxidase Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1: Predominantly detected in the heart, placenta, lung, and small intestine (PubMed:17018530). Isoform 2: Highly detected in the kidney, pancreas, spleen, and thymus, and is absent in lung (PubMed:17018530). In eye, present in
Sequence
Sequence length 753
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Elastic fibre formation
Crosslinking of collagen fibrils
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Myopia 28, autosomal recessive Pathogenic rs2104441352, rs2530025111 RCV001843703
RCV004798952
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL RECESSIVE STICKLER SYNDROME Orphanet
Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BELL'S PALSY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LOXL3-related disorder Uncertain significance; Likely benign; Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Astigmatism Astigmatism HPO_DG
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune disease Pubtator 34539672 Associate
★☆☆☆☆
Found in Text Mining only
Autosomal recessive Stickler syndrome Stickler Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Breast Carcinoma Breast Carcinoma BEFREE 19015874, 22231744
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 19015874
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Dwarfism Dwarfism HPO_DG
★☆☆☆☆
Found in Text Mining only
Dystonic Disorders Dystonia Pubtator 36917121 Associate
★☆☆☆☆
Found in Text Mining only
Epiphyseal dysplasia Epiphyseal dysplasia HPO_DG
★☆☆☆☆
Found in Text Mining only
Frontotemporal Dementia Frontotemporal dementia Pubtator 34539672 Associate
★☆☆☆☆
Found in Text Mining only