| SNP ID |
Visualize variation |
Clinical significance |
Consequence |
| rs121908316 |
C>T |
Pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
| rs200079039 |
G>T |
Likely-pathogenic |
Coding sequence variant, non coding transcript variant, stop gained |
| rs201227603 |
G>A |
Pathogenic |
Splice donor variant |
| rs281865093 |
T>G |
Pathogenic |
Splice donor variant |
| rs748883997 |
G>- |
Pathogenic |
Intron variant, coding sequence variant, non coding transcript variant, frameshift variant |
| rs750685598 |
GA>- |
Pathogenic |
Non coding transcript variant, coding sequence variant, frameshift variant |
| rs753185316 |
C>G |
Pathogenic |
Non coding transcript variant, coding sequence variant, stop gained |
| rs755083879 |
C>G |
Pathogenic |
Non coding transcript variant, coding sequence variant, stop gained |
| rs778152054 |
GT>- |
Pathogenic |
Non coding transcript variant, coding sequence variant, frameshift variant |
| rs780183200 |
G>A |
Likely-pathogenic |
Missense variant, non coding transcript variant, coding sequence variant |
| rs1488175163 |
G>T |
Pathogenic |
Non coding transcript variant, stop gained, coding sequence variant |
| rs1553750083 |
GTGACGCGCTTTTCGTGGCGGCGGGC>- |
Likely-pathogenic |
Frameshift variant, non coding transcript variant, coding sequence variant |
| rs1553750097 |
G>C,T |
Uncertain-significance, likely-pathogenic |
Stop gained, non coding transcript variant, missense variant, coding sequence variant |
| rs1576687466 |
C>T |
Likely-pathogenic |
Non coding transcript variant, coding sequence variant, stop gained |
|
|
Evidence Score:
★☆☆☆☆ Gene-disease association found in Text Mining only
★★☆☆☆ Found in Text Mining and Unknown/Other Associations
★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources
★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
|
| Phenotype Name |
Clinical Significance |
dbSNP ID |
RCV Accession |
Evidence Score |
| Hepatocellular carcinoma |
Pathogenic |
rs141023798 |
RCV005935076 |
★★★★★★★★★☆ ClinVar: Pathogenic / Likely Pathogenic (<5 Variants) |
| Hermansky-Pudlak syndrome |
Likely pathogenic; Pathogenic |
rs1411572278, rs1476066527, rs760577035, rs2108184819, rs34388030, rs201227603, rs397507168, rs121908316, rs2472689274, rs2473069453, rs753185316, rs1553750097, rs780183200, rs1576695913, rs1576708708, rs750685598, rs755083879, rs200079039, rs369855073, rs755841847, rs745457191, rs281865095 View all (7 more) |
RCV001826144 RCV001826149 RCV005057830 RCV005614688 RCV005616391 RCV000826142 RCV001831513 RCV001272473 RCV003226866 RCV005616643 RCV000852039 RCV000851675 RCV000851268 RCV000852087 RCV000851759 RCV001830815 RCV001272477 RCV001827166 RCV001828612 RCV005236707 RCV001828839 RCV001834054 View all (17 more) |
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| Hermansky-Pudlak syndrome 2 |
Likely pathogenic; Pathogenic |
rs200079039 |
RCV001003902 |
★★★★★★★★★☆ ClinVar: Pathogenic / Likely Pathogenic (<5 Variants) |
| Hermansky-Pudlak syndrome 3 |
Likely pathogenic; Pathogenic |
rs746906314, rs1411572278, rs1476066527, rs1309602954, rs1292407171, rs1363245838, rs1032570128, rs2108173648, rs763305108, rs1723609962, rs1286892626, rs1466073004, rs770108122, rs760577035, rs868868714, rs765169755, rs756611897, rs749632423, rs752837159, rs2108184819, rs281865095, rs755724489, rs866769733, rs2108158577, rs2472688962, rs2473072769, rs2473073722, rs767709648, rs2473072537, rs2473068670, rs2473114037, rs2473107472, rs2473128423, rs2473067970, rs2473069629, rs2473073776, rs1723933181, rs2473069504, rs2473120947, rs2473069116, rs2108152614, rs2473114195, rs2473128520, rs2473128577, rs34388030, rs2473068114, rs761144920, rs2473082163, rs371430031, rs2473069141, rs2473072448, rs2473124121, rs2473072416, rs2473110376, rs2473072455, rs2473073701, rs2473068223, rs2473128694, rs1722734460, rs2473081667, rs201227603, rs281865093, rs397507168, rs121908316, rs2473044613, rs1722344275, rs772860370, rs1336214631, rs2473124437, rs1180676335, rs760787980, rs752087954, rs2473045386, rs2473044980, rs1724515936, rs2473045441, rs2473093098, rs1245464556, rs2473082110, rs2473073532, rs575323437, rs2473045365, rs2473069453, rs769037441, rs2473107383, rs2473099280, rs760255783, rs2473072237, rs1271131796, rs2473120938, rs2473120193, rs2473069907, rs2473120370, rs2473099287, rs2473067623, rs2473124553, rs2473113411, rs1723042117, rs2108152647, rs2473070242, rs2473068323, rs2472688343, rs1722737993, rs2473099293, rs1312261586, rs2473069079, rs2473045787, rs766446900, rs2473110430, rs2473081922, rs780470124, rs758736477, rs2472693625, rs2473072847, rs2473120100, rs2473107445, rs2473099536, rs1559908974, rs1173829042, rs2473124046, rs2473069109, rs1349881223, rs1576708708, rs1722728402, rs2472689165, rs2473073837, rs760647222, rs2473082189, rs779088731, rs1553750083, rs753185316, rs780183200, rs1576695913, rs748883997, rs750685598, rs778152054, rs755083879, rs1488175163, rs1576687466, rs200079039, rs1330496818, rs369855073, rs1363164647, rs755841847, rs745457191, rs373037058, rs1282659169 View all (132 more) |
RCV003145647 RCV001780288 RCV003462958 RCV001780368 RCV003469685 RCV003469708 RCV003473954 RCV003469665 RCV001783429 RCV001782263 RCV003475301 RCV003448433 RCV003471135 RCV003475220 RCV003471106 RCV002482749 RCV003471160 RCV003475178 RCV003475180 RCV003475119 RCV005025520 RCV003471286 RCV005023313 RCV002051961 RCV002306469 RCV002306536 RCV002306549 RCV002306630 RCV002306673 RCV002306818 RCV002309647 RCV002309680 RCV002309722 RCV002309773 RCV002309812 RCV002309851 RCV002309863 RCV002309897 RCV002309906 RCV002309946 RCV002307887 RCV002307895 RCV002307950 RCV002307966 RCV002307988 RCV002308090 RCV002308205 RCV002308257 RCV002308297 RCV002308378 RCV002309097 RCV002309265 RCV002309436 RCV002309444 RCV002307040 RCV002307067 RCV002310115 RCV002308472 RCV004572781 RCV005870021 RCV000004872 RCV000004873 RCV000004874 RCV000004875 RCV000004876 RCV003465793 RCV004571185 RCV005032361 RCV003465809 RCV003465820 RCV004571253 RCV003465846 RCV004798973 RCV004571380 RCV004571790 RCV003476450 RCV003469792 RCV003469793 RCV003469794 RCV003469795 RCV003476451 RCV003476452 RCV003469796 RCV003469797 RCV003476453 RCV003469798 RCV003476454 RCV003469799 RCV003469801 RCV003469802 RCV003469804 RCV003469805 RCV003469806 RCV003469807 RCV003469808 RCV003461725 RCV003469809 RCV003469810 RCV003469811 RCV003469812 RCV003469813 RCV003469814 RCV003461726 RCV003469815 RCV003469816 RCV003469817 RCV003469818 RCV003469819 RCV003461727 RCV003469820 RCV003469821 RCV003469823 RCV003469824 RCV003461728 RCV003469825 RCV003469826 RCV003461729 RCV005030070 RCV005030086 RCV004576725 RCV004576726 RCV004576727 RCV004576728 RCV004576730 RCV004576731 RCV004576732 RCV004576733 RCV004576734 RCV004576735 RCV004576736 RCV000672579 RCV003465685 RCV003465684 RCV003465686 RCV003467433 RCV003473517 RCV001095689 RCV002495161 RCV003472386 RCV000824870 RCV003467565 RCV003467820 RCV001196934 RCV002504284 RCV003469414 RCV002504306 RCV003473834 RCV003469443 RCV003469437 View all (144 more) |
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| HPS3-related disorder |
Likely pathogenic; Pathogenic |
rs752837159, rs201227603, rs2473120616, rs750685598 |
RCV003892970 RCV004745146 RCV003911369 RCV003392626 |
★★★★★★★★★☆ ClinVar: Pathogenic / Likely Pathogenic (<5 Variants) |
|
| Phenotype Name |
Clinical Significance |
Source |
Evidence Score |
| Abnormal bleeding |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Cervical cancer |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| DEFICIENCY OF FERROXIDASE |
— |
Disgenet
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Gastric cancer |
Benign |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| HERMANSKI-PUDLAK SYNDROME |
— |
CTD, Disgenet
CTD, Disgenet
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| HERMANSKY-PUDLAK SYNDROME DUE TO BLOC-2 DEFICIENCY |
— |
Disgenet, Orphanet
Disgenet, Orphanet
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| HERMANSKY-PUDLAK SYNDROME WITHOUT PULMONARY FIBROSIS |
— |
Disgenet
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Lung cancer |
Benign |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Nonpapillary renal cell carcinoma |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Ovarian serous cystadenocarcinoma |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Prostate cancer |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Squamous cell carcinoma of the head and neck |
Uncertain significance |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Thrombocytopenia |
Uncertain significance |
ClinVar
Disgenet
| ★★★★★★★★☆☆ Reported in Unknown/Other Associations (≥2 sources) |
| Thymoma |
Benign |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Uterine carcinosarcoma |
Benign |
ClinVar
| ★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
|
| Disease Name |
Disease (Merged) |
Source |
PMID |
Relationship Type |
Evidence Score |
| Albinism |
Albinism |
BEFREE |
24766090 |
|
★★★★★★☆☆☆☆ Found in Text Mining only |
| Albinism |
Albinism |
Pubtator |
33808351, 35488210 |
Associate |
★★★★★★☆☆☆☆ Found in Text Mining only |
| Blood Platelet Disorders |
Platelet disorder |
Pubtator |
38007062 |
Associate |
★★★★★★☆☆☆☆ Found in Text Mining only |
| Colorectal Carcinoma |
Colorectal Cancer |
UNIPROT_DG |
|
|
★★★★★★☆☆☆☆ Found in Text Mining only |
| Hermanski-Pudlak Syndrome |
Hermansky-Pudlak Syndrome |
LHGDN |
11590544, 12125811 |
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Hermanski-Pudlak Syndrome |
Hermansky-Pudlak Syndrome |
CLINVAR_DG |
11590544, 25525159 |
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Hermanski-Pudlak Syndrome |
Hermansky-Pudlak Syndrome |
BEFREE |
15288994, 15632015, 30791930 |
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Hermanski-Pudlak Syndrome |
Hermansky-Pudlak Syndrome |
GENOMICS_ENGLAND_DG |
|
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Hermanski-Pudlak Syndrome |
Hermansky-Pudlak Syndrome |
CTD_human_DG |
|
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Hermansky Pudlak syndrome 2 |
Hermansky-pudlak syndrome |
Pubtator |
11590544 |
Associate |
★★★★★★☆☆☆☆ Found in Text Mining only |
| HERMANSKY-PUDLAK SYNDROME 3 |
Hermansky-Pudlak Syndrome |
GENOMICS_ENGLAND_DG |
11455388, 11590544, 28284561 |
|
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| HERMANSKY-PUDLAK SYNDROME 3 |
Hermansky-Pudlak Syndrome |
UNIPROT_DG |
11455388, 11590544 |
|
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| HERMANSKY-PUDLAK SYNDROME 3 |
Hermansky-Pudlak Syndrome |
BEFREE |
11592818, 28284561 |
|
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| HERMANSKY-PUDLAK SYNDROME 3 |
Hermansky-Pudlak Syndrome |
CLINVAR_DG |
|
|
★★★★★★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants) |
| Hermansky-Pudlak syndrome without pulmonary fibrosis |
Hermansky-Pudlak Syndrome Without Pulmonary Fibrosis |
Orphanet |
|
|
★★★★★★★☆☆☆ Found in Text Mining + Unknown/Other Associations |
| Horizontal Nystagmus |
Horizontal nystagmus |
HPO_DG |
|
|
★★★★★★☆☆☆☆ Found in Text Mining only |
| Hypopigmentation disorder |
Hypopigmentation Disorder |
BEFREE |
12125811, 15632015 |
|
★★★★★★☆☆☆☆ Found in Text Mining only |
| Inflammatory Bowel Diseases |
Inflammatory bowel disease |
Pubtator |
33423334 |
Associate |
★★★★★★☆☆☆☆ Found in Text Mining only |
| Nystagmus |
Nystagmus |
HPO_DG |
|
|
★★★★★★☆☆☆☆ Found in Text Mining only |
| Vision Disorders |
Visual disorder |
Pubtator |
11590544 |
Associate |
★★★★★★☆☆☆☆ Found in Text Mining only |
|