Gene Gene information from NCBI Gene database.
Entrez ID 84314
Gene name Transmembrane protein 107
Gene symbol TMEM107
Synonyms (NCBI Gene)
GRVS638JBTS29MKS13PRO1268
Chromosome 17
Chromosome location 17p13.1
Summary This gene encodes a transmembrane protein and component of the primary cilia transition zone. The encoded protein regulates ciliogenesis and ciliary protein composition. Human fibroblasts expressing a mutant allele of this gene exhibit reduced numbers of
miRNA miRNA information provided by mirtarbase database.
208
miRTarBase ID miRNA Experiments Reference
MIRT051417 hsa-let-7e-5p CLASH 23622248
MIRT039501 hsa-miR-652-3p CLASH 23622248
MIRT437537 hsa-miR-19b-3p Immunoprecipitaion 22382630
MIRT652522 hsa-miR-3606-3p HITS-CLIP 23824327
MIRT652521 hsa-miR-513a-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0003127 Process Detection of nodal flow IEA
GO:0005515 Function Protein binding IPI 26595381, 32296183
GO:0005929 Component Cilium IEA
GO:0007368 Process Determination of left/right symmetry IEA
GO:0010468 Process Regulation of gene expression IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
616183 28128 ENSG00000179029
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6UX40
Protein name Transmembrane protein 107
Protein function Plays a role in cilia formation and embryonic patterning. Requires for normal Sonic hedgehog (Shh) signaling in the neural tube and acts in combination with GLI2 and GLI3 to pattern ventral and intermediate neuronal cell types (By similarity). D
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14995 TMEM107 7 129 Transmembrane protein Family
Sequence
Sequence length 140
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Joubert syndrome 29 Pathogenic rs752171066 RCV000495826
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leukoencephalopathy with calcifications and cysts Pathogenic rs1555526172 RCV004767304
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Meckel syndrome 13 Pathogenic rs1131692180, rs1555525895 RCV000495829
RCV000495830
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Orofaciodigital syndrome Pathogenic rs752171066 RCV000236136
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CILIOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CILIOPATHY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MECKEL SYNDROME Orphanet
Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MECKEL SYNDROME TYPE 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anencephaly Anencephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Anophthalmos Syndromic microphthalmia HPO_DG
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebellar Hypoplasia Cerebellar Hypoplasia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathies BEFREE 26123494, 26518474, 28954202
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ciliopathies Ciliopathy Pubtator 38158857 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital absence of spleen Asplenia HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital cerebral hernia Congenital Cerebral Hernia HPO_DG
★☆☆☆☆
Found in Text Mining only
Cryptorchidism Cryptorchidism HPO_DG
★☆☆☆☆
Found in Text Mining only