Gene Gene information from NCBI Gene database.
Entrez ID 84224
Gene name NBPF member 3
Gene symbol NBPF3
Synonyms (NCBI Gene)
AE2
Chromosome 1
Chromosome location 1p36.12
Summary This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the
miRNA miRNA information provided by mirtarbase database.
325
miRTarBase ID miRNA Experiments Reference
MIRT647756 hsa-miR-3675-3p HITS-CLIP 23824327
MIRT647757 hsa-miR-5193 HITS-CLIP 23824327
MIRT647755 hsa-miR-660-3p HITS-CLIP 23824327
MIRT647754 hsa-miR-6845-3p HITS-CLIP 23824327
MIRT647753 hsa-miR-4279 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
1
GO ID Ontology Definition Evidence Reference
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612992 25076 ENSG00000142794
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H094
Protein name NBPF family member NBPF3 (Neuroblastoma breakpoint family member 3) (Protein AE2) (Protein SHIIIa4)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06758 Olduvai 234 296 Olduvai domain Domain
PF06758 Olduvai 320 382 Olduvai domain Domain
PF06758 Olduvai 392 457 Olduvai domain Domain
PF06758 Olduvai 467 532 Olduvai domain Domain
PF06758 Olduvai 542 607 Olduvai domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in testis and fetal heart, as well as in non small cell lung carcinoma and neuroblastoma cell line. {ECO:0000269|PubMed:16079250}.
Sequence
MPLTPTVQGFQWTLRGPDVETSPFGAPRAASHGVGRHQELRDPTVPGPTSSATNVSMVVS
AGPWSGEKAEMNILEINKKSRPQLAENKQQFRNLKQKCLVTQVAYFLANRQNNYDYEDCK
DLIKSMLRDERLLTEEKLAEELGQAEELRQYKVLVHSQERELTQLREKLQEGRDASRSLN
QHLQALLTPDEPDNSQGRDLREQLAEGCRLAQHLVQKLSPENDDDEDEDVKVEEAEKVQE
LYAPREVQKAEEKEVPEDSLEECAITCSNSHHPCESNQPYGNTRITFEEDQVDSTL
IDSS
SHDEWLDAVCIIPENESDHEQEEEKGPVSPRNLQESEEEEAPQESWDEGDWTLSIPPDMS
ASYQSDRSTFHSVEEQQVGLAL
DIGRHWCDQVKKEDQEATSPRLSRELLDEKEPEVLQDS
LDRFYSTPFEYLELPDLCQPYRSDFYSLQEQHLGLAL
DLDRMKKDQEEEEDQGPPCPRLS
RELPEVVEPEDLQDSLDRWYSTPFSYPELPDSCQPYGSCFYSLEEEHVGFSL
DVDEIEKY
QEGEEDQKPPCPRLNEVLMEAEEPEVLQDSLDRCYSTTSTYFQLHASFQQYRSAFYSFEE
QDVSLAL
DVDNRFFTLTVIRHHLAFQMGVIFPH
Sequence length 633
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
4
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hereditary breast ovarian cancer syndrome Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
NEPHROLITHIASIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
UROLITHIASIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
B-Cell Lymphomas B-Cell Lymphoma BEFREE 29191842
★☆☆☆☆
Found in Text Mining only
Biliary Atresia Biliary atresia Pubtator 30358741 Associate
★☆☆☆☆
Found in Text Mining only
Liver carcinoma Liver carcinoma BEFREE 19224338
★☆☆☆☆
Found in Text Mining only
Primary biliary cirrhosis Biliary Cirrhosis BEFREE 21691115
★☆☆☆☆
Found in Text Mining only