Gene Gene information from NCBI Gene database.
Entrez ID 8398
Gene name Phospholipase A2 group VI
Gene symbol PLA2G6
Synonyms (NCBI Gene)
CaI-PLA2GVIINAD1IPLA2-VIANBIA2NBIA2ANBIA2BPARK14PLA2PNPLA9iPLA2iPLA2beta
Chromosome 22
Chromosome location 22q13.1
Summary The protein encoded by this gene is an A2 phospholipase, a class of enzyme that catalyzes the release of fatty acids from phospholipids. The encoded protein may play a role in phospholipid remodelling, arachidonic acid release, leukotriene and prostagland
SNPs SNP information provided by dbSNP.
80
SNP ID Visualize variation Clinical significance Consequence
rs121908681 T>C,G Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs121908682 A>T Pathogenic Coding sequence variant, missense variant
rs121908683 G>A Pathogenic Coding sequence variant, missense variant
rs121908685 C>A,T Uncertain-significance, pathogenic Coding sequence variant, 5 prime UTR variant, missense variant
rs141045127 C>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
9
miRTarBase ID miRNA Experiments Reference
MIRT1238850 hsa-miR-1275 CLIP-seq
MIRT1238851 hsa-miR-3160-3p CLIP-seq
MIRT1238852 hsa-miR-409-3p CLIP-seq
MIRT1238853 hsa-miR-4487 CLIP-seq
MIRT1238854 hsa-miR-4525 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
45
GO ID Ontology Definition Evidence Reference
GO:0003847 Function 1-alkyl-2-acetylglycerophosphocholine esterase activity ISS
GO:0004622 Function Phosphatidylcholine lysophospholipase activity IDA 20886109
GO:0004622 Function Phosphatidylcholine lysophospholipase activity IEA
GO:0004623 Function Phospholipase A2 activity IEA
GO:0004623 Function Phospholipase A2 activity TAS 9417066
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603604 9039 ENSG00000184381
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O60733
Protein name 85/88 kDa calcium-independent phospholipase A2 (CaI-PLA2) (EC 3.1.1.4) (2-lysophosphatidylcholine acylhydrolase) (EC 3.1.1.5) (Group VI phospholipase A2) (GVI PLA2) (Intracellular membrane-associated calcium-independent phospholipase A2 beta) (iPLA2-beta)
Protein function Calcium-independent phospholipase involved in phospholipid remodeling with implications in cellular membrane homeostasis, mitochondrial integrity and signal transduction. Hydrolyzes the ester bond of the fatty acyl group attached at sn-1 or sn-2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00023 Ank 151 181 Ankyrin repeat Repeat
PF00023 Ank 219 250 Ankyrin repeat Repeat
PF00023 Ank 316 348 Ankyrin repeat Repeat
PF00023 Ank 349 381 Ankyrin repeat Repeat
PF01734 Patatin 481 665 Patatin-like phospholipase Family
Tissue specificity TISSUE SPECIFICITY: Four different transcripts were found to be expressed in a distinct tissue distribution.
Sequence
MQFFGRLVNTFSGVTNLFSNPFRVKEVAVADYTSSDRVREEGQLILFQNTPNRTWDCVLV
NPRNSQSGFRLFQLELEADALVNFHQYSSQLLPFYESSPQVLHTEVLQHLTDLIRNHPSW
SVAHLAVELGIRECFHHSRIISCANCAENEEGCTPLHLACRKGDGEILVELVQYCHTQMD
V
TDYKGETVFHYAVQGDNSQVLQLLGRNAVAGLNQVNNQGLTPLHLACQLGKQEMVRVLL
LCNARCNIMG
PNGYPIHSAMKFSQKGCAEMIISMDSSQIHSKDPRYGASPLHWAKNAEMA
RMLLKRGCNVNSTSSAGNTALHVAVMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSK
DNVEMIKALIVFGAEVDTPND
FGETPTFLASKIGRLVTRKAILTLLRTVGAEYCFPPIHG
VPAEQGSAAPHHPFSLERAQPPPISLNNLELQDLMHISRARKPAFILGSMRDEKRTHDHL
LCLDGGGVKGLIIIQLLIAIEKASGVATKDLFDWVAGTSTGGILALAILHSKSMAYMRGM
YFRMKDEVFRGSRPYESGPLEEFLKREFGEHTKMTDVRKPKVMLTGTLSDRQPAELHLFR
NYDAPETVREPRFNQNVNLRPPAQPSDQLVWRAARSSGAAPTYFRPNGRFLDGGLLANNP
TLDAM
TEIHEYNQDLIRKGQANKVKKLSIVVSLGTGRSPQVPVTCVDVFRPSNPWELAKT
VFGAKELGKMVVDCCTDPDGRAVDRARAWCEMVGIQYFRLNPQLGTDIMLDEVSDTVLVN
ALWETEVYIYEHREEFQKLIQLLLSP
Sequence length 806
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Glycerophospholipid metabolism
Ether lipid metabolism
Arachidonic acid metabolism
Linoleic acid metabolism
alpha-Linolenic acid metabolism
Metabolic pathways
Ras signaling pathway
Efferocytosis
Vascular smooth muscle contraction
Fc gamma R-mediated phagocytosis
Inflammatory mediator regulation of TRP channels
  Acyl chain remodelling of PC
Acyl chain remodelling of PE
Role of phospholipids in phagocytosis
COPI-independent Golgi-to-ER retrograde traffic
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
69
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal brain morphology Likely pathogenic rs1060499764 RCV000454298
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Abnormality of the nervous system Likely pathogenic; Pathogenic rs2145682922, rs2145683127, rs2145722278 RCV001814551
RCV001814543
RCV001814478
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive Parkinson disease 14 Pathogenic; Likely pathogenic rs1484455290, rs2145683127, rs368008077, rs1000303487, rs587784350, rs587784339, rs149712244, rs587784336, rs587784327, rs587784361, rs2087622708, rs797044903, rs121908681, rs121908683, rs587784353
View all (20 more)
RCV004796605
RCV005023187
RCV005038262
RCV005038323
RCV003883135
View all (30 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cerebellar ataxia Likely pathogenic; Pathogenic rs121908681 RCV001003639
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Coronary Syndrome Coronary Syndrome BEFREE 15840736, 8598867, 9093541
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 8117291
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 9458096
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 10571045, 9458096
★☆☆☆☆
Found in Text Mining only
Adult-onset dystonia-parkinsonism Dystonia-Parkinsonism Orphanet
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 22832605 Inhibit
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease, Late Onset Alzheimer disease BEFREE 20464283
★☆☆☆☆
Found in Text Mining only
Anemia, Sickle Cell Anemia BEFREE 27436223
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia HPO_DG
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 10807743, 11257275, 17728329, 20846430, 24523407
★☆☆☆☆
Found in Text Mining only