Gene Gene information from NCBI Gene database.
Entrez ID 83959
Gene name Solute carrier family 4 member 11
Gene symbol SLC4A11
Synonyms (NCBI Gene)
BTR1CDPD1CHEDCHED2NABC1dJ794I6.2
Chromosome 20
Chromosome location 20p13
Summary This gene encodes a voltage-regulated, electrogenic sodium-coupled borate cotransporter that is essential for borate homeostasis, cell growth and cell proliferation. Mutations in this gene have been associated with a number of endothelial corneal dystroph
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs121909387 C>T Pathogenic Coding sequence variant, non coding transcript variant, genic downstream transcript variant, missense variant
rs121909388 G>A Pathogenic Coding sequence variant, genic downstream transcript variant, downstream transcript variant, non coding transcript variant, missense variant
rs121909389 C>T Pathogenic Coding sequence variant, non coding transcript variant, 3 prime UTR variant, missense variant
rs121909390 G>A,C Pathogenic Coding sequence variant, genic downstream transcript variant, synonymous variant, stop gained, non coding transcript variant, missense variant
rs121909391 G>A Pathogenic Coding sequence variant, non coding transcript variant, genic downstream transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
7
miRTarBase ID miRNA Experiments Reference
MIRT1364874 hsa-miR-210 CLIP-seq
MIRT1364875 hsa-miR-338-3p CLIP-seq
MIRT1364876 hsa-miR-4530 CLIP-seq
MIRT1364877 hsa-miR-4684-5p CLIP-seq
MIRT2626667 hsa-miR-1228 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
44
GO ID Ontology Definition Evidence Reference
GO:0005272 Function Sodium channel activity IDA 15525507
GO:0005372 Function Water transmembrane transporter activity IDA 23813972, 31273259
GO:0005452 Function Solute:inorganic anion antiporter activity IEA
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610206 16438 ENSG00000088836
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NBS3
Protein name Solute carrier family 4 member 11 (Sodium borate cotransporter 1) (NaBC1)
Protein function Multifunctional transporter with an impact in cell morphology and differentiation. In the presence of borate B(OH)4(-), acts as a voltage-dependent electrogenic Na(+)-coupled B(OH)4(-) cotransporter controlling boron homeostasis (PubMed:15525507
PDB 7X1G , 7X1H , 7X1I , 7X1J
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00955 HCO3_cotransp 336 835 HCO3- transporter family Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Highly expressed in kidney, testis, salivary gland, thyroid, trachea and corneal endothelium. Not detected in retina and lymphocytes. {ECO:0000269|PubMed:11302728, ECO:0000269|PubMed:16767101}.; TISSUE SPECIFICITY: [I
Sequence
MSQVGGRGDRCTQEVQGLVHGAGDLSASLAENSPTMSQNGYFEDSSYYKCDTDDTFEARE
EILGDEAFDTANSSIVSGESIRFFVNVNLEMQATNTENEATSGGCVLLHTSRKYLKLKNF
KEEIRAHRDLDGFLAQASIVLNETATSLDNVLRTMLRRFARDPDNNEPNCNLDLLMAMLF
TDAGAPMRGKVHLLSDTIQGVTATVTGVRYQQSWLCIICTMKALQKRHVCISRLVRPQNW
GENSCEVRFVILVLAPPKMKSTKTAMEVARTFATMFSDIAFRQKLLETRTEEEFKEALVH
QRQLLTMVSHGPVAPRTKERSTVSLPAHRHPEPPKCKDFVPFGKGIREDIARRFPLYPLD
FTDGIIGKNKAVGKYITTTLFLYFACLLPTIAFGSLNDENTDGAIDVQKTIAGQSIGGLL
YALFSGQPLVILLTTAPLALYIQVIRVICDDYDLDFNSFYAWTGLWNSFFLALYAFFNLS
LVMSLFKRSTEEIIALFISITFVLDAVKGTVKIFWKYYYGHYLDDYHTKRTSSLVSLSGL
GASLNASLHTALNASFLASPTELPSATHSGQATAVLSLLIMLGTLWLGYTLYQFKKSPYL
HPCVREILSDCALPIAVLAFSLISSHGFREIEMSKFRYNPSESPFAMAQIQSLSLRAVSG
AMGLGFLLSMLFFIEQNLVAALVNAPENRLVKGTAYHWDLLLLAIINTGLSLFGLPWIHA
AYPHSPLHVRALALVEERVENGHIYDTIVNVKETRLTSLGASVLVGLSLLLLPVPLQWIP
KPVLYGLFLYIALTSLDGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGL
QVLQL
LLLCAFGMSSLPYMKMIFPLIMIAMIPIRYILLPRIIEAKYLDVMDAEHRP
Sequence length 891
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital hereditary endothelial dystrophy of cornea Likely pathogenic; Pathogenic rs2122503902, rs1233324021, rs869320721, rs371909885, rs764217666, rs746532062, rs750656470, rs776659347, rs1568528185, rs121909387, rs121909388, rs121909389, rs121909390, rs869320720, rs121909391
View all (20 more)
RCV005038164
RCV002488197
RCV002488196
RCV005038194
RCV005025632
View all (33 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Corneal dystrophy Pathogenic; Likely pathogenic rs121909389, rs869320721, rs766567944 RCV005859450
RCV006253445
RCV006254345
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Corneal dystrophy, Fuchs endothelial, 4 Likely pathogenic; Pathogenic rs2122503902, rs1233324021, rs869320721, rs371909885, rs764217666, rs750656470, rs776659347, rs1568528185, rs121909390, rs121909392, rs121909396, rs121909394, rs267607064, rs1600618680, rs766567944
View all (11 more)
RCV005038164
RCV002488197
RCV002488196
RCV005038194
RCV005025632
View all (22 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Corneal dystrophy-perceptive deafness syndrome Likely pathogenic; Pathogenic rs2122503902, rs1233324021, rs772916997, rs869320721, rs780346984, rs1311747266, rs371909885, rs764217666, rs757244518, rs1298347142, rs1335324642, rs2067871973, rs750656470, rs776659347, rs1568528185
View all (27 more)
RCV005038164
RCV002488197
RCV001779160
RCV005606824
RCV005038194
View all (39 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL HEREDITARY ENDOTHELIAL DYSTROPHY TYPE II Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CORNEAL DYSTROPHY AND PERCEPTIVE DEAFNESS CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CORNEAL DYSTROPHY, POSTERIOR POLYMORPHOUS, 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Corneal Dystrophy, Recessive Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Breast Carcinoma Breast Carcinoma BEFREE 9671742
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 31556319 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 29091960
★☆☆☆☆
Found in Text Mining only
Chandler syndrome Chandler Syndrome BEFREE 16825429, 17220209, 25811729, 28642546, 30557570
★☆☆☆☆
Found in Text Mining only
Chandler syndrome Chandler Syndrome CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal Neoplasms BEFREE 10857754
★☆☆☆☆
Found in Text Mining only
Congenital corneal dystrophy Congenital corneal dystrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital hereditary endothelial dystrophy Congenital Hereditary Endothelial Dystrophy BEFREE 10512674, 12654361, 16767101, 17262014, 17397048, 17679935, 18363173, 18474783, 20848555, 21203343, 24351571, 24502824, 25007886, 25564336, 26286922
View all (12 more)
★☆☆☆☆
Found in Text Mining only
Congenital hereditary endothelial dystrophy Congenital Hereditary Endothelial Dystrophy GENOMICS_ENGLAND_DG 16767101
★☆☆☆☆
Found in Text Mining only
Congenital hereditary endothelial dystrophy type II Congenital Hereditary Endothelial Dystrophy Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations