Gene Gene information from NCBI Gene database.
Entrez ID 83700
Gene name Junctional adhesion molecule 3
Gene symbol JAM3
Synonyms (NCBI Gene)
JAM-2JAM-3JAM-CJAMC
Chromosome 11
Chromosome location 11q25
Summary Tight junctions represent one mode of cell-to-cell adhesion in epithelial or endothelial cell sheets, forming continuous seals around cells and serving as a physical barrier to prevent solutes and water from passing freely through the paracellular space.
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs397514678 T>C,G Pathogenic Missense variant, initiator codon variant
rs397515438 G>A Pathogenic Missense variant, coding sequence variant
rs397515439 G>A Pathogenic Missense variant, coding sequence variant, intron variant
rs761700427 G>T Pathogenic Splice donor variant
rs774867496 A>C,G,T Pathogenic Initiator codon variant, missense variant
miRNA miRNA information provided by mirtarbase database.
191
miRTarBase ID miRNA Experiments Reference
MIRT1076343 hsa-miR-320a CLIP-seq
MIRT1076344 hsa-miR-320b CLIP-seq
MIRT1076345 hsa-miR-320c CLIP-seq
MIRT1076346 hsa-miR-320d CLIP-seq
MIRT1076347 hsa-miR-320e CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
72
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis IDA 20592283
GO:0001525 Process Angiogenesis IEA
GO:0001780 Process Neutrophil homeostasis IEA
GO:0002250 Process Adaptive immune response IEA
GO:0002318 Process Myeloid progenitor cell differentiation IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606871 15532 ENSG00000166086
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BX67
Protein name Junctional adhesion molecule C (JAM-C) (JAM-2) (Junctional adhesion molecule 3) (JAM-3) [Cleaved into: Soluble form of JAM-C (sJAM-C)]
Protein function Junctional adhesion protein that mediates heterotypic cell-cell interactions with its cognate receptor JAM2 to regulate different cellular processes (PubMed:11590146, PubMed:11823489). Plays a role in homing and mobilization of hematopoietic ste
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07686 V-set 36 136 Immunoglobulin V-set domain Domain
PF13927 Ig_3 138 223 Domain
Tissue specificity TISSUE SPECIFICITY: Detected on round and elongated spermatids (at protein level) (PubMed:15372036). Highest expression in placenta, brain and kidney. Significant expression is detected on platelets. Expressed in intestinal mucosa cells. Expressed in the
Sequence
Sequence length 310
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cell adhesion molecules
Tight junction
Leukocyte transendothelial migration
Epithelial cell signaling in Helicobacter pylori infection
  Cell surface interactions at the vascular wall
Integrin cell surface interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Porencephaly-microcephaly-bilateral congenital cataract syndrome Pathogenic; Likely pathogenic rs763250381, rs2497297743, rs2497284984, rs761700427, rs397515438, rs397515439, rs397514678, rs774867496, rs1942959311, rs2120862502, rs141004644 RCV003326600
RCV003485933
RCV003445353
RCV000023581
RCV000034812
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aicardi Goutieres syndrome Aicardi goutieres syndrome Pubtator 21109224 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 17612407
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis LHGDN 17612407
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 18821692 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis LHGDN 16195363
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 27573188 Associate
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial fibrillation Pubtator 36653368 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Attention Deficit and Disruptive Behavior Disorders Attention deficit hyperactivity disorder Pubtator 27164683 Associate
★☆☆☆☆
Found in Text Mining only
Autoimmune Chronic Hepatitis Autoimmune hepatitis BEFREE 29753567
★☆☆☆☆
Found in Text Mining only
B-Cell Lymphomas B-Cell Lymphoma LHGDN 17429428
★☆☆☆☆
Found in Text Mining only