Gene Gene information from NCBI Gene database.
Entrez ID 8292
Gene name Collagen like tail subunit of asymmetric acetylcholinesterase
Gene symbol COLQ
Synonyms (NCBI Gene)
CMS5EAD
Chromosome 3
Chromosome location 3p25.1
Summary This gene encodes the subunit of a collagen-like molecule associated with acetylcholinesterase in skeletal muscle. Each molecule is composed of three identical subunits. Each subunit contains a proline-rich attachment domain (PRAD) that binds an acetylcho
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs104893733 C>A Pathogenic Stop gained, coding sequence variant
rs104893734 G>C Pathogenic Stop gained, coding sequence variant
rs104893735 C>A Pathogenic Stop gained, coding sequence variant
rs121908922 T>A,C Pathogenic Stop gained, missense variant, coding sequence variant
rs121908923 T>C,G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
83
miRTarBase ID miRNA Experiments Reference
MIRT017367 hsa-miR-335-5p Microarray 18185580
MIRT903266 hsa-miR-1264 CLIP-seq
MIRT903267 hsa-miR-1273g CLIP-seq
MIRT903268 hsa-miR-1285 CLIP-seq
MIRT903269 hsa-miR-1343 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0001507 Process Acetylcholine catabolic process in synaptic cleft TAS 9689136
GO:0005201 Function Extracellular matrix structural constituent RCA 25037231
GO:0005515 Function Protein binding IPI 15526038, 32296183
GO:0005581 Component Collagen trimer IEA
GO:0005604 Component Basement membrane TAS 9689136
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603033 2226 ENSG00000206561
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y215
Protein name Acetylcholinesterase collagenic tail peptide (AChE Q subunit) (Acetylcholinesterase-associated collagen)
Protein function Anchors the catalytic subunits of asymmetric AChE to the synaptic basal lamina.
PDB 1VZJ
Family and domains
Tissue specificity TISSUE SPECIFICITY: Found at the end plate of skeletal muscle.
Sequence
MVVLNPMTLGIYLQLFFLSIVSQPTFINSVLPISAALPSLDQKKRGGHKACCLLTPPPPP
LFPPPFFRGGRSPLLSPDMKNLMLELETSQSPCMQGSLGSPGPPGPQGPPGLPGKTGPKG
EKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGYPG
SRGEKGSRGEKGDLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQG
QKGDSGVMGPPGKPGPSGQPGRPGPPGPPPAGQLIMGPKGERGFPGPPGRCLCGPTMNVN
NPSYGESVYGPSSPRVPVIFVVNNQEELERLNTQNAIAFRRDQRSLYFKDSLGWLPIQLT
PFYPVDYTADQHGTCGDGLLQPGEECDDGNSDVGDDCIRCHRAYCGDGHRHEGVEDCDGS
DFGYLTCETYLPGSYGDLQCTQYCYIDSTPCRYFT
Sequence length 455
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic; Pathogenic rs2125081666, rs752967536, rs2125089059, rs1203598816, rs769982050, rs1575482936 RCV001814488
RCV001814402
RCV001814496
RCV001814417
RCV001813960
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cervical cancer Pathogenic rs149020371 RCV005912145
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
COLQ-related disorder Pathogenic rs121908923 RCV004757099
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital myasthenic syndrome Pathogenic; Likely pathogenic rs2125089093, rs2062264317, rs758554049, rs769982050, rs121908923, rs1384843815, rs2470828749, rs770045897, rs1320483615, rs139574075, rs1085307792, rs149020371 RCV005235617
RCV003490914
RCV004801218
RCV000825560
RCV004526590
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital Myasthenic Syndrome, Recessive Uncertain significance; Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIGESTIVE SYSTEM DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIVERTICULAR DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 26369544, 29455652
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial fibrillation Pubtator 34737791 Associate
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Class III malocclusion Malocclusion HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital clubfoot Congenital Clubfoot HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital disorder of glycosylation type 1C Congenital disorder of glycosylation Pubtator 9758617 Associate
★☆☆☆☆
Found in Text Mining only
Congenital myasthenic syndrome ib Congenital myasthenic syndrome Pubtator 33353066 Associate
★☆☆☆☆
Found in Text Mining only
Deglutition Disorders Dysphagia HPO_DG
★☆☆☆☆
Found in Text Mining only
Dementia Dementia BEFREE 28779628
★☆☆☆☆
Found in Text Mining only