Gene Gene information from NCBI Gene database.
Entrez ID 8260
Gene name N-alpha-acetyltransferase 10, NatA catalytic subunit
Gene symbol NAA10
Synonyms (NCBI Gene)
ARD1ARD1AARD1PDXS707LZMSMAAMCOPS1NATDOGDNSTE2hARD1
Chromosome X
Chromosome location Xq28
Summary N-alpha-acetylation is among the most common post-translational protein modifications in eukaryotic cells. This process involves the transfer of an acetyl group from acetyl-coenzyme A to the alpha-amino group on a nascent polypeptide and is essential for
SNPs SNP information provided by dbSNP.
21
SNP ID Visualize variation Clinical significance Consequence
rs387906701 A>G Pathogenic Missense variant, coding sequence variant
rs587776457 A>T Pathogenic Splice donor variant
rs587780562 C>A Pathogenic Missense variant, coding sequence variant
rs863225427 T>G Pathogenic Missense variant, coding sequence variant
rs878853263 A>C,T Pathogenic Intron variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
19
miRTarBase ID miRNA Experiments Reference
MIRT031471 hsa-miR-16-5p Proteomics 18668040
MIRT052136 hsa-let-7b-5p CLASH 23622248
MIRT045213 hsa-miR-186-5p CLASH 23622248
MIRT042605 hsa-miR-423-3p CLASH 23622248
MIRT732214 hsa-miR-342-5p Luciferase reporter assayqRT-PCRWestern blot 26646451
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0004596 Function Protein-N-terminal amino-acid acetyltransferase activity IDA 19480662
GO:0004596 Function Protein-N-terminal amino-acid acetyltransferase activity IDA 25489052
GO:0004596 Function Protein-N-terminal amino-acid acetyltransferase activity IEA
GO:0005515 Function Protein binding IPI 15496142, 16507339, 19480662, 21295525, 25416956, 25489052, 27708256, 28514442, 31515488, 32296183, 32814053, 33961781, 35156780, 36012204, 36442525
GO:0005634 Component Nucleus IDA 15496142, 25732826
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300013 18704 ENSG00000102030
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P41227
Protein name N-alpha-acetyltransferase 10 (EC 2.3.1.255) (N-terminal acetyltransferase complex ARD1 subunit homolog A) (hARD1) (NatA catalytic subunit Naa10)
Protein function Catalytic subunit of N-terminal acetyltransferase complexes which display alpha (N-terminal) acetyltransferase activity (PubMed:15496142, PubMed:19420222, PubMed:19826488, PubMed:20145209, PubMed:20154145, PubMed:25489052, PubMed:27708256, PubMe
PDB 6C95 , 6C9M , 6PPL , 6PW9 , 9F1B , 9F1C , 9F1D , 9FPZ , 9FQ0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00583 Acetyltransf_1 13 128 Acetyltransferase (GNAT) family Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12464182}.
Sequence
MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKM
EEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALH
LYSNTLNF
QISEVEPKYYADGEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKV
ESKGNSPPSSGEACREEKGLAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS
Sequence length 235
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Intellectual disability Pathogenic; Likely pathogenic rs797044868, rs878853264, rs1603290366, rs2065185202 RCV001257765
RCV000824880
RCV000851497
RCV001195646
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Microphthalmia, syndromic 1 Pathogenic; Likely pathogenic rs587776457, rs387906701, rs1603289774, rs1603289772, rs2065185202, rs2065171820 RCV000088650
RCV005055521
RCV001215737
RCV001215735
RCV002287477
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
NAA10-related disorder Likely pathogenic; Pathogenic rs587780563, rs797044868 RCV004528848
RCV003401042
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
NAA10-related syndrome Likely pathogenic; Pathogenic rs878853264 RCV005868141
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Intellectual disability, autosomal dominant Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Kleine-Levin syndrome Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Malignant lymphoma, large B-cell, diffuse Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MICROPHTHALMIA WITH ANKYLOBLEPHARON AND INTELLECTUAL DISABILITY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ABLEPHARON-MACROSTOMIA SYNDROME Ablepharon macrostomia syndrome BEFREE 30278484
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 16705796
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 27602772
★☆☆☆☆
Found in Text Mining only
Anophthalmos Anophthalmia Pubtator 30842225 Associate
★☆☆☆☆
Found in Text Mining only
Anophthalmos Syndromic microphthalmia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 28222187, 29329335
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 28222187, 29329335
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only